Group testing as a strategy for COVID-19 epidemiological monitoring and community surveillance

V Brault, B Mallein, JF Rupprecht - PLoS computational biology, 2021 - journals.plos.org
We propose an analysis and applications of sample pooling to the epidemiologic monitoring
of COVID-19. We first introduce a model of the RT-qPCR process used to test for the …

From individual-based epidemic models to McKendrick-von Foerster PDEs: A guide to modeling and inferring COVID-19 dynamics

F Foutel-Rodier, F Blanquart, P Courau… - Journal of Mathematical …, 2022 - Springer
We present a unifying, tractable approach for studying the spread of viruses causing
complex diseases requiring to be modeled using a large number of types (eg, infective …

A branching process with coalescence to model random phylogenetic networks

F Bienvenu, JJ Duchamps - Electronic Journal of Probability, 2024 - projecteuclid.org
We introduce a biologically natural, mathematically tractable model of random phylogenetic
network to describe evolution in the presence of hybridization. One of the features of this …

Totally ordered measured trees and splitting trees with infinite variation

A Lambert, G Uribe Bravo - 2018 - projecteuclid.org
Combinatorial trees can be used to represent genealogies of asexual individuals. These
individuals can be endowed with birth and death times, to obtain a so-called 'chronological …

Discrete time Hawkes processes with inhibition

A Muraro - 2024 - theses.hal.science
This thesis focuses on Hawkes processes, which are continuous-time stochastic processes
whose intensity is random and depends on the entire history of the process. These …

Scaling limits for Crump-Mode-Jagers processes with immigration via stochastic Volterra equations

W Xu - arXiv preprint arXiv:1809.05931, 2018 - arxiv.org
In this paper, we firstly give a reconstruction for Crump-Mode-Jagers processes with
immigration as solutions to a class of stochastic Volterra integral equations, which offers us a …

Height and contour processes of Crump-Mode-Jagers forests (III): The binary, homogeneous universality class

E Schertzer, F Simatos - arXiv preprint arXiv:2104.07424, 2021 - arxiv.org
This paper belongs to a series of papers aiming to investigate scaling limits of Crump-Mode-
Jagers (CMJ) trees. In the previous two papers we identified general conditions under which …

Markovian tricks for non-Markovian trees: contour process, extinction and scaling limits

B Cloez, B Henry - arXiv preprint arXiv:1801.03284, 2018 - arxiv.org
In this work, we study a family of non-Markovian trees modeling populations where
individuals live and reproduce independently with possibly time-dependent birth-rate and …

Height and contour processes of Crump-Mode-Jagers forests (II): the Bellman–Harris universality class

E Schertzer, F Simatos - 2019 - projecteuclid.org
Abstract Crump–Mode–Jagers (CMJ) trees generalize Galton–Watson trees by allowing
individuals to live for an arbitrary duration and give birth at arbitrary times during their life …

[引用][C] Crump-Mode-Jagers Processes with Immigration and Their Scaling Limits: Light-tailed Case

W Xu - arXiv preprint arXiv:1809.05931, 2018