[PDF][PDF] Machine learning in bioinformatics

P Larranaga, B Calvo, R Santana… - Briefings in …, 2006 - academic.oup.com
This article reviews machine learning methods for bioinformatics. It presents modelling
methods, such as supervised classification, clustering and probabilistic graphical models for …

A Bayesian Belief Network model of organizational factors for improving safe work behaviors in Thai construction industry

B Jitwasinkul, BHW Hadikusumo, AQ Memon - Safety science, 2016 - Elsevier
Organizational factors and human factors are intimately related and intermingled with each
other. Therefore, development of the implications for improving work safety behaviors is …

[图书][B] Handbook of computational molecular biology

S Aluru - 2005 - taylorfrancis.com
The enormous complexity of biological systems at the molecular level must be answered
with powerful computational methods. Computational biology is a young field, but has seen …

Soft computing methods for the prediction of protein tertiary structures: A survey

AE Márquez-Chamorro, G Asencio-Cortés… - Applied Soft …, 2015 - Elsevier
The problem of protein structure prediction (PSP) represents one of the most important
challenges in computational biology. Determining the three dimensional structure of proteins …

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry

R Karchin, M Cline… - Proteins: Structure …, 2003 - Wiley Online Library
An important problem in computational biology is predicting the structure of the large
number of putative proteins discovered by genome sequencing projects. Fold‐recognition …

Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection

T Damoulas, MA Girolami - Bioinformatics, 2008 - academic.oup.com
Motivation: The problems of protein fold recognition and remote homology detection have
recently attracted a great deal of interest as they represent challenging multi-feature multi …

Using rotation forest for protein fold prediction problem: An empirical study

A Dehzangi, S Phon-Amnuaisuk, M Manafi… - … , Machine Learning and …, 2010 - Springer
Recent advancement in the pattern recognition field has driven many classification
algorithms being implemented to tackle protein fold prediction problem. In this paper, a …

pyProGA—a PyMOL plugin for protein residue network analysis

V Sladek, Y Yamamoto, R Harada, M Shoji, Y Shigeta… - PLoS …, 2021 - journals.plos.org
The field of protein residue network (PRN) research has brought several useful methods and
techniques for structural analysis of proteins and protein complexes. Many of these are ripe …

Twin removal in genetic algorithms for protein structure prediction using low-resolution model

MT Hoque, M Chetty, A Lewis… - IEEE/ACM Transactions …, 2009 - ieeexplore.ieee.org
This paper presents the impact of twins and the measures for their removal from the
population of genetic algorithm (GA) when applied to effective conformational searching. It is …

Graphical models for statistical inference and data assimilation

AT Ihler, S Kirshner, M Ghil, AW Robertson… - Physica D: Nonlinear …, 2007 - Elsevier
In data assimilation for a system which evolves in time, one combines past and current
observations with a model of the dynamics of the system, in order to improve the simulation …