Advances in nematode identification: A journey from fundamentals to evolutionary aspects

KA Bhat, RA Mir, A Farooq, M Manzoor, A Hami… - Diversity, 2022 - mdpi.com
Nematodes are non-segmented roundworms evenly distributed with various habitats
ranging to approximately every ecological extremity. These are the least studied organisms …

[HTML][HTML] Shift from morphological to recent advanced molecular approaches for the identification of nematodes

RU Nisa, AY Tantray, AA Shah - Genomics, 2022 - Elsevier
Nematodes are the most diverse but most minor studied microorganisms found in soil, water,
animals, or plants. Either beneficial or pathogenic, they significantly affect human and …

MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences

M Leray, N Knowlton, RJ Machida - Environmental DNA, 2022 - Wiley Online Library
Abstract Analysis of environmental DNA is increasingly used to characterize ecological
communities, but the effectiveness of this approach depends on the accuracy of taxonomic …

Current practice in plankton metabarcoding: optimization and error management

LF Santoferrara - Journal of Plankton Research, 2019 - academic.oup.com
High-throughput sequencing of a targeted genetic marker is being widely used to analyze
biodiversity across taxa and environments. Amid a multitude of exciting findings, scientists …

[PDF][PDF] Metabarcoding data allow for reliable biomass estimates in the most abundant animals on earth

J Schenk, S Geisen, N Kleinboelting… - Metabarcoding and …, 2019 - mbmg.pensoft.net
Microscopic organisms are the dominant and most diverse organisms on Earth. Nematodes,
as part of this microscopic diversity, are by far the most abundant animals and their diversity …

Comparison of morphological, DNA barcoding, and metabarcoding characterizations of freshwater nematode communities

J Schenk, N Kleinbölting… - Ecology and …, 2020 - Wiley Online Library
Biomonitoring approaches and investigations of many ecological questions require
assessments of the biodiversity of a given habitat. Small organisms, ranging from …

Diatom metabarcoding applied to large scale monitoring networks: Optimization of bioinformatics strategies using Mothur software

SF Rivera, V Vasselon, A Bouchez, F Rimet - Ecological indicators, 2020 - Elsevier
Benthic diatoms are routinely used as ecological indicators in rivers. A standardized
methodology is based on biofilm sampling, species identification, and counting under …

Salinity drives meiofaunal community structure dynamics across the Baltic ecosystem

E Broman, C Raymond, C Sommer… - Molecular …, 2019 - Wiley Online Library
Coastal benthic biodiversity is under increased pressure from climate change,
eutrophication, hypoxia, and changes in salinity due to increase in river runoff. The Baltic …

Metabarcoding unsorted kick‐samples facilitates macroinvertebrate‐based biomonitoring with increased taxonomic resolution, while outperforming environmental …

L Pereira‐da‐Conceicoa, V Elbrecht, A Hall… - Environmental …, 2021 - Wiley Online Library
While previous studies have highlighted the potential of DNA‐based methods for the
biomonitoring of freshwater macroinvertebrates, a limited number have investigated …

Biodiversity estimates and ecological interpretations of meiofaunal communities are biased by the taxonomic approach

F Leasi, JL Sevigny, EM Laflamme, T Artois… - Communications …, 2018 - nature.com
Accurate assessments of biodiversity are crucial to advising ecosystem-monitoring programs
and understanding ecosystem function. Nevertheless, a standard operating procedure to …