[PDF][PDF] Implicit solvation models: equilibria, structure, spectra, and dynamics

CJ Cramer, DG Truhlar - Chemical Reviews, 1999 - Citeseer
The present review is concerned with continuum and other implicit models of solvation
effects. We will concentrate on the elements required to make such models successful and …

Theoretical methods for the description of the solvent effect in biomolecular systems

M Orozco, FJ Luque - Chemical Reviews, 2000 - ACS Publications
The environment plays a key role in the determination of the properties and reactivity of
substances in condensed phases. The complexity of chemical phenomena in solution has …

Scaling of ab initio force fields by MOLVIB

T Sundius - Vibrational Spectroscopy, 2002 - Elsevier
Nowadays, it is possible to perform ab initio calculations on relatively large molecules. The
vibrational frequencies obtained in this way differ from the observed frequencies, partly …

Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases

J Šponer, J Leszczynski… - … : Original Research on …, 2001 - Wiley Online Library
This review summarizes results concerning molecular interactions of nucleic acid bases as
revealed by advanced ab initio quantum chemical (QM) calculations published in last few …

[PDF][PDF] Tip‐enhanced Raman spectroscopy of single RNA strands: towards a novel direct‐sequencing method

E Bailo, V Deckert - Angewandte Chemie International Edition, 2008 - academia.edu
The sequencing of DNA or proteins is procedurally complex and requires sophisticated
analytical techniques.[1, 2] DNA sequencing while a very powerful method requires …

Langevin dipoles model for ab initio calculations of chemical processes in solution: Parametrization and application to hydration free energies of neutral and ionic …

J Florián, A Warshel - The Journal of Physical Chemistry B, 1997 - ACS Publications
A new parametrization of the Langevin dipole (LD) model is developed for ab initio
calculations of chemical processes in aqueous solution. This parametrization is …

Vertical-flow paper SERS system for therapeutic drug monitoring of flucytosine in serum

AG Berger, SM Restaino, IM White - Analytica chimica acta, 2017 - Elsevier
A number of life-saving drugs require therapeutic drug monitoring (TDM) for safe and
effective use. Currently, however, TDM is performed using sophisticated analytical …

Structure and Vibrational Spectra of the Zwitterion l-Alanine in the Presence of Explicit Water Molecules:  A Density Functional Analysis

E Tajkhorshid, KJ Jalkanen, S Suhai - The Journal of Physical …, 1998 - ACS Publications
Ab initio B3LYP/6-31G* optimized geometries, vibrational frequencies, and absorption
intensities have been calculated for the l-alanine zwitterion (ALAZW) structures stabilized by …

DNA vibrational coupling revealed with two-dimensional infrared spectroscopy: Insight into why vibrational spectroscopy is sensitive to DNA structure

AT Krummel, MT Zanni - The Journal of Physical Chemistry B, 2006 - ACS Publications
Two-dimensional infrared (2D IR) spectroscopy was used to study the carbonyl vibrational
modes of guanine and cytosine bases in A-and B-form DNA. Located between 1600 and …

Triplet Excimer Formation in a DNA Duplex with Silver Ion-Mediated Base Pairs

L Martínez-Fernández, FR Kohl, Y Zhang… - Journal of the …, 2024 - ACS Publications
The dynamics of excited electronic states in self-assembled structures formed between silver
(I) ions and cytosine-containing DNA strands or monomeric cytosine derivatives were …