Identification of words in biological sequences under the semi-Markov hypothesis

BI Garcia-Maya, N Limnios - Journal of Computational Biology, 2020 - liebertpub.com
Identifying a word (pattern) in a long sequence of letters is not an easy task. To achieve this
objective, several models have been proposed under the assumption that the sequence of …

Identification of Patterns in a Semi‐Markov Chain

BI Garcia‐Maya, N Limnios - Statistical Topics and Stochastic …, 2020 - Wiley Online Library
The sojourn time in a state in a Markov chain must be dictated by the geometric distribution
in a discrete process. This is the main disadvantage of considering Markov chains in real …

Properties of words and competing risk processes under semi-Markov hypothesis

BIG Maya - 2020 - theses.hal.science
Our thesis is dedicated in big part, to solving certain problems in biology (biologic
sequences and lifespan using the competing risk framework) under semi-Markovian …

[PDF][PDF] Thèse présentée pour l'obtention du grade de Docteur de l'UTC

AG GARCÍA - researchgate.net
Résume L'objectif de cette thèse était le développement d'un substitut bio-hybride pour la
reconstruction du continuum tendon-os sur le principe de la ingénierie tissulaire. Après une …

Statistical analysis of the number of self-overlapping leftmost repeats in an homogeneous stationary Markov chain on finite states

F Ziram, D Cellier, F Charlot - Communications in Statistics-Theory …, 2016 - Taylor & Francis
This article addresses the problem of repeats detection used in the comparison of significant
repeats in sequences. The case of self-overlapping leftmost repeats for large sequences …

[PDF][PDF] On the length of the longest exact position match in a Markov sequence

G Reinert, MS Waterman - stats.ox.ac.uk
A mixed Poisson approximation and a Poisson approximation for the length of the longest
exact match of a Markov sequence across another sequence are provided, where the match …

14 Approximation de Poisson pour le nombre de répétitions dans une séquence markovienne

N Touyar, S Schbath - Faculté des Sciences d'Orsay, 2005 - Citeseer
L'étude des répétitions dans les génomes fait partie des problemes importants de l'analyse
des séquences et de nombreux algorithmes ont été développés pour rechercher ces …