Systems biology approaches to identify driver genes and drug combinations for treating COVID-19

A Ebrahimi, F Roshani - Scientific Reports, 2024 - nature.com
Abstract Corona virus 19 (Covid-19) has caused many problems in public health, economic,
and even cultural and social fields since the beginning of the epidemic. However, in order to …

Nodes with the highest control power play an important role at the final level of cooperation in directed networks

A Ebrahimi, M Yousefi, F Shahbazi… - Scientific reports, 2021 - nature.com
Controllability of complex networks aims to seek the lowest number of nodes (the driver
nodes) that can control all the nodes by receiving the input signals. The concept of control …

An order independent algorithm for inferring gene regulatory network using quantile value for conditional independence tests

SH Mahmoodi, R Aghdam, C Eslahchi - Scientific reports, 2021 - nature.com
In recent years, due to the difficulty and inefficiency of experimental methods, numerous
computational methods have been introduced for inferring the structure of Gene Regulatory …

Using structural controllability in detecting effective immune system elements against cancer cells

A Ebrahimi, R Fayazi, SB Ghavami, E Safari… - Authorea …, 2024 - essopenarchive.org
Motivation: Cancer, a leading cause of death worldwide, is intertwined with immune system.
Changing the state of immune system, as a complex network of cells and molecules …

[PDF][PDF] An Order Independent Algorithm for Inferring Gene Regulatory Network Using Quantile Value for Conditional Independent Tests

SH Mahmoudi, R Aghdam, C Eslahchi - assets-eu.researchsquare.com
Background: In recent years, due to the difficulty and inefficiency of experimental methods,
numerous computational methods have been introduced for inferring structure of Gene …

[PDF][PDF] CANDIDATE'S DECLARATION

AK Mia, AP Hridi - 2017 - academia.edu
This thesis aims to extract complete gene expression data and model an optimized gene
network so that genomic structure can be researched on more efficiently for further …