Comprehensive Study of the Clinical Phenotype of Germline BAP1 Variant-Carrying Families Worldwide

S Walpole, AL Pritchard, CM Cebulla… - JNCI: Journal of the …, 2018 - academic.oup.com
Background The BRCA1-associated protein-1 (BAP1) tumor predisposition syndrome (BAP1-
TPDS) is a hereditary tumor syndrome caused by germline pathogenic variants in BAP1 …

miRTarBase 2020: updates to the experimentally validated microRNA–target interaction database

HY Huang, YCD Lin, J Li, KY Huang… - Nucleic acids …, 2020 - academic.oup.com
MicroRNAs (miRNAs) are small non-coding RNAs (typically consisting of 18–25
nucleotides) that negatively control expression of target genes at the post-transcriptional …

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions

CH Chou, S Shrestha, CD Yang… - Nucleic acids …, 2018 - academic.oup.com
MicroRNAs (miRNAs) are small non-coding RNAs of∼ 22 nucleotides that are involved in
negative regulation of mRNA at the post-transcriptional level. Previously, we developed …

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx

M Mounir, M Lucchetta, TC Silva, C Olsen… - PLoS computational …, 2019 - journals.plos.org
The advent of Next-Generation Sequencing (NGS) technologies has opened new
perspectives in deciphering the genetic mechanisms underlying complex diseases …

Drug design and disease diagnosis: the potential of deep learning models in biology

S Sreeraman, MP Kannan… - Current …, 2023 - ingentaconnect.com
Early prediction and detection enable reduced transmission of human diseases and provide
healthcare professionals ample time to make subsequent diagnoses and treatment …

A circRNA–miRNA–mRNA network identification for exploring underlying pathogenesis and therapy strategy of hepatocellular carcinoma

D Xiong, Y Dang, P Lin, D Wen, R He, D Luo… - Journal of translational …, 2018 - Springer
Abstract Background Circular RNAs (circRNAs) have received increasing attention in human
tumor research. However, there are still a large number of unknown circRNAs that need to …

miRTarBase update 2022: an informative resource for experimentally validated miRNA–target interactions

HY Huang, YCD Lin, S Cui, Y Huang… - Nucleic acids …, 2022 - academic.oup.com
MicroRNAs (miRNAs) are noncoding RNAs with 18–26 nucleotides; they pair with target
mRNAs to regulate gene expression and produce significant changes in various …

Computational techniques and tools for omics data analysis: state-of-the-art, challenges, and future directions

P Kaur, A Singh, I Chana - Archives of Computational Methods in …, 2021 - Springer
The heterogeneous and high-dimensional nature of omics data presents various challenges
in gaining insights while analysis. In the era of big data, omics data is available as genome …

Significance of tumor mutation burden combined with immune infiltrates in the progression and prognosis of ovarian cancer

F Bi, Y Chen, Q Yang - Cancer cell international, 2020 - Springer
Background Ovarian cancer (OC) is the most malignant tumor in the female reproductive
system. About 75% of OC in complete remission of clinical symptoms still develop a …

Characterization of glycolysis-associated molecules in the tumor microenvironment revealed by pan-cancer tissues and lung cancer single cell data

J Wei, K Huang, Z Chen, M Hu, Y Bai, S Lin, H Du - Cancers, 2020 - mdpi.com
Altered metabolism is a hallmark of cancer and glycolysis is one of the important factors
promoting tumor development. There is however still a lack of molecular characterization …