Deepro-Glu: combination of convolutional neural network and Bi-LSTM models using ProtBert and handcrafted features to identify lysine glutarylation sites

X Wang, Z Ding, R Wang, X Lin - Briefings in Bioinformatics, 2023 - academic.oup.com
Lysine glutarylation (Kglu) is a newly discovered post-translational modification of proteins
with important roles in mitochondrial functions, oxidative damage, etc. The established …

Accurately predicting glutarylation sites using sequential bi-peptide-based evolutionary features

ME Arafat, MW Ahmad, SM Shovan, A Dehzangi… - Genes, 2020 - mdpi.com
Post Translational Modification (PTM) is defined as the alteration of protein sequence upon
interaction with different macromolecules after the translation process. Glutarylation is …

Mal-light: Enhancing lysine malonylation sites prediction problem using evolutionary-based features

MW Ahmad, ME Arafat, G Taherzadeh, A Sharma… - IEEE …, 2020 - ieeexplore.ieee.org
Post Translational Modification (PTM) is considered an important biological process with a
tremendous impact on the function of proteins in both eukaryotes, and prokaryotes cells …

Enhanced prediction of lysine propionylation sites using Bi-peptide evolutionary features resolving data imbalance

MW Ahmad, ME Arafat, SM Shovan… - 2020 IEEE Region …, 2020 - ieeexplore.ieee.org
Lysine propionylation is an extensive post-translational modification in both eukaryotes and
prokaryotes which brings a significant regulatory role. However, for various biological …