Exploring scoring function space: Developing computational models for drug discovery

G Bitencourt-Ferreira, MA Villarreal… - Current Medicinal …, 2024 - benthamdirect.com
Background: The idea of scoring function space established a systems-level approach to
address the development of models to predict the affinity of drug molecules by those …

Optimal Molecular Design: Generative Active Learning Combining REINVENT with Precise Binding Free Energy Ranking Simulations

HH Loeffler, S Wan, M Klähn, AP Bhati… - Journal of Chemical …, 2024 - ACS Publications
Active learning (AL) is a specific instance of sequential experimental design and uses
machine learning to intelligently choose the next data point or batch of molecular structures …

[HTML][HTML] In Silico Conotoxin Studies: Progress and Prospects

R Li, MM Hasan, D Wang - Molecules, 2024 - mdpi.com
Cone snails of the genus Conus have evolved to produce structurally distinct and
functionally diverse venom peptides for defensive and predatory purposes. This nature …

Integrating Reaction Schemes, Reagent Databases, and Virtual Libraries into Fragment-Based Design by Reinforcement Learning

S Sauer, H Matter, G Hessler… - Journal of Chemical …, 2023 - ACS Publications
Lead optimization supported by artificial intelligence (AI)-based generative models has
become increasingly important in drug design. Success factors are reagent availability …

SAnDReS 2.0: Development of machine‐learning models to explore the scoring function space

WF de Azevedo Jr, R Quiroga… - Journal of …, 2024 - Wiley Online Library
Classical scoring functions may exhibit low accuracy in determining ligand binding affinity
for proteins. The availability of both protein–ligand structures and affinity data make it …

Generative AI in Drug Designing: Current State-of-the-Art and Perspectives

S Ahmad, N Bano, S Sharma, S Sakina… - Generative AI: Current …, 2024 - Springer
Abstract Generative Artificial Intelligence (GenAI) is a branch of AI focused on creating new
data or outputs, such as images, text, sounds, and molecular structures of novel compounds …

Optimal Molecular Design: Generative Active Learning Combining REINVENT with Absolute Binding Free Energy Simulations

H Loeffler, S Wan, M Klähn, A Bhati, P Coveney - 2024 - chemrxiv.org
Active learning (AL) is a specific instance of sequential experimental design and uses
machine learning to intelligently choose the next data point or batch of molecular structures …

[PDF][PDF] Development of Machine-Learning Models to Explore the Scoring Function Space with SAnDReS 2.0

WF de Azevedo Jr, MA Villarreal, R Quiroga - iris.unipa.it
Classical scoring functions from docking programs exhibit low accuracy in determining
proteinligand binding affinity. The availability of protein structures with affinity data makes it …

Optimizing Data Pipelines for Generative AI Workflows: Challenges and Best Practices

VNK Kundavaram - IJSAT-International Journal on Science and … - ijsat.org
The research studies optimizing data pipelines for generative AI workflows within the US
retail industry, focusing on challenges, impacts, and best practices. The study describes …