The human symbiont Mucispirillum schaedleri: causality in health and disease

S Herp, AC Durai Raj, M Salvado Silva… - Medical microbiology …, 2021 - Springer
Trillions of bacteria inhabit the mammalian gastrointestinal tract. In the majority of hosts,
these symbionts contribute largely to beneficial functions promoting microbe-host …

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …

[HTML][HTML] Arrhythmic gut microbiome signatures predict risk of type 2 diabetes

S Reitmeier, S Kiessling, T Clavel, M List, EL Almeida… - Cell host & …, 2020 - cell.com
Lifestyle, obesity, and the gut microbiome are important risk factors for metabolic disorders.
We demonstrate in 1,976 subjects of a German population cohort (KORA) that specific …

[HTML][HTML] Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions

L Narunsky-Haziza, GD Sepich-Poore, I Livyatan… - Cell, 2022 - cell.com
Cancer-microbe associations have been explored for centuries, but cancer-associated fungi
have rarely been examined. Here, we comprehensively characterize the cancer mycobiome …

The oral-gut axis: Salivary and fecal microbiome dysbiosis in patients with inflammatory bowel disease

MMH Abdelbary, M Hatting, A Bott… - Frontiers in Cellular …, 2022 - frontiersin.org
Inflammatory bowel disease (IBD) is a group of chronic inflammatory disorders that fall into
two main categories: Crohn's disease (CD) and ulcerative colitis (UC). The gastrointestinal …

Lipocalin-2 expression identifies an intestinal regulatory neutrophil population during acute graft-versus-host disease

M Czech, S Schneider, N Peltokangas… - Science translational …, 2024 - science.org
Acute graft-versus-host disease (aGVHD) is a life-threatening complication of allogeneic
hematopoietic cell transplantation (allo-HCT), for which therapeutic options are limited …

An economical and flexible dual barcoding, two-step PCR approach for highly multiplexed amplicon sequencing

P Pjevac, B Hausmann, J Schwarz, G Kohl… - Frontiers in …, 2021 - frontiersin.org
In microbiome research, phylogenetic and functional marker gene amplicon sequencing is
the most commonly-used community profiling approach. Consequently, a plethora of …

Probiotics and antibiotic-induced microbial aberrations in children: a secondary analysis of a randomized clinical trial

TH Dierikx, AM Malinowska, J Łukasik… - JAMA Network …, 2024 - jamanetwork.com
Importance Probiotics are often considered in children to prevent antibiotic-associated
diarrhea. However, the underlying mechanistic effects and impact of probiotics on antibiotic …

[HTML][HTML] Gut microbiota alterations in schizophrenia might be related to stress exposure: Findings from the machine learning analysis

P Karpiński, P Żebrowska-Różańska, D Kujawa… - …, 2023 - Elsevier
Specific mechanisms underlying gut microbiota alterations in schizophrenia remain
unknown. We aimed to compare gut microbiota between patients with schizophrenia and …

Interactions between root hairs and the soil microbial community affect the growth of maize seedlings

A Quattrone, M Lopez‐Guerrero, P Yadav… - Plant, Cell & …, 2024 - Wiley Online Library
Root hairs are considered important for rhizosphere formation, which affects root system
functioning. Through interactions with soil microorganisms mediated by root exudation, root …