Fluorescence in situ hybridization for the detection of prokaryotes

H Daims, K Stoecker, M Wagner - Molecular microbial ecology, 2004 - taylorfrancis.com
Determining the structure and dynamics of microbial communities is a core component of
microbial ecology. Traditionally, microbiologists used timeconsuming cultivation-based …

The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance

M Wagner, M Horn - Current opinion in biotechnology, 2006 - Elsevier
In the rRNA-based tree of life four bacterial phyla, comprising the Planctomycetes,
Verrucomicrobia, Chlamydiae and Lentisphaerae, form together with the candidate phyla …

Valid publication of the names of forty-two phyla of prokaryotes

A Oren, GM Garrity - International Journal of Systematic …, 2021 - microbiologyresearch.org
After the International Committee on Systematics of Prokaryotes (ICSP) had voted to include
the rank of phylum in the rules of the International Code of Nomenclature of Prokaryotes …

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

M García-López, JP Meier-Kolthoff, BJ Tindall… - Frontiers in …, 2019 - frontiersin.org
Although considerable progress has been made in recent years regarding the classification
of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify …

Molecular diversity and ecology of microbial plankton

SJ Giovannoni, U Stingl - Nature, 2005 - nature.com
The history of microbial evolution in the oceans is probably as old as the history of life itself.
In contrast to terrestrial ecosystems, microorganisms are the main form of biomass in the …

Planctomycetes as host-associated bacteria: a perspective that holds promise for their future isolations, by mimicking their native environmental niches in clinical …

OD Kaboré, S Godreuil, M Drancourt - Frontiers in Cellular and …, 2020 - frontiersin.org
Traditionally recognized as environmental bacteria, Planctomycetes have just been linked
recently to human pathology as opportunistic pathogens, arousing a great interest for clinical …

Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates

A Bollmann, K Lewis, SS Epstein - Applied and environmental …, 2007 - Am Soc Microbiol
The majority of microorganisms from natural environments cannot be grown in the
laboratory. The diffusion-chamber-based approach is an alternative method that allows …

Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum …

S Hou, KS Makarova, JHW Saw, P Senin, BV Ly… - Biology Direct, 2008 - Springer
Abstract Background The phylum Verrucomicrobia is a widespread but poorly characterized
bacterial clade. Although cultivation-independent approaches detect representatives of this …

Expanding the world of marine bacterial and archaeal clades

P Yilmaz, P Yarza, JZ Rapp, FO Glöckner - Frontiers in microbiology, 2016 - frontiersin.org
Determining which microbial taxa are out there, where they live, and what they are doing is a
driving approach in marine microbial ecology. The importance of these questions is …

Expression patterns reveal niche diversification in a marine microbial assemblage

SM Gifford, S Sharma, M Booth, MA Moran - The ISME journal, 2013 - academic.oup.com
Resolving the ecological niches of coexisting marine microbial taxa is challenging due to the
high species richness of microbial communities and the apparent functional redundancy in …