Low RNA stability signifies increased post-transcriptional regulation of cell identity genes

Y Li, Y Yi, J Lv, X Gao, Y Yu, SS Babu… - Nucleic acids …, 2023 - academic.oup.com
Cell identity genes are distinct from other genes with respect to the epigenetic mechanisms
to activate their transcription, eg by super-enhancers and broad H3K4me3 domains …

Low RNA stability signifies strong expression regulatability of tumor suppressors

X Gao, Y Yi, J Lv, Y Li, K Arulsamy… - Nucleic acids …, 2023 - academic.oup.com
RNA expression of a gene is determined by not only transcriptional regulation, but also post-
transcriptional regulation of RNA decay. The precise regulation of RNA stability in the cell …

Methylation-dependent and-independent roles of EZH2 synergize in CDCA8 activation in prostate cancer

Y Yi, Y Li, C Li, L Wu, D Zhao, F Li, L Fazli, R Wang… - Oncogene, 2022 - nature.com
Cell division cycle-associated 8 (CDCA8) is a component of chromosomal passenger
complex (CPC) that participates in mitotic regulation. Although cancer-related CDCA8 …

Deciphering a mitochondria-related signature to supervise prognosis and immunotherapy in hepatocellular carcinoma

Y Shi, G Huang, F Jiang, J Zhu, Q Xu, H Fang… - Frontiers in …, 2022 - frontiersin.org
Background Hepatocellular carcinoma (HCC) is a major public health problem in humans.
The imbalance of mitochondrial function has been discovered to be closely related to the …

Loss of grand histone H3 lysine 27 trimethylation domains mediated transcriptional activation in esophageal squamous cell carcinoma

J Yuan, Q Jiang, T Gong, D Fan, J Zhang… - NPJ Genomic …, 2021 - nature.com
Trimethylation of histone H3 lysine 27 trimethylation (H3K27me3) may be recruited by
repressive Polycomb complexes to mediate gene silencing, which is critical for maintaining …

TSCRE: a comprehensive database for tumor-specific cis-regulatory elements

G Peng, B Liu, M Zheng, L Zhang, H Li, M Liu… - NAR …, 2024 - academic.oup.com
Cis-regulatory elements (CREs) and super cis-regulatory elements (SCREs) are non-coding
DNA regions which influence the transcription of nearby genes and play critical roles in …

A minimal standardized human bone marrow microphysiological system to assess resident cell behavior during normal and pathological processes

T Voeltzel, G Fossard, M Degaud, K Geistlich… - Biomaterials …, 2022 - pubs.rsc.org
Bone marrow is a complex and dynamic microenvironment that provides essential cues to
resident cells. We developed a standardized three-dimensional (3D) model to decipher …

Partial erosion on under-methylated regions and chromatin reprogramming contribute to oncogene activation in IDH mutant gliomas

X Wang, L Dai, Y Liu, C Li, D Fan, Y Zhou, P Li… - Epigenetics & …, 2023 - Springer
Background IDH1/2 hotspot mutations are well known to drive oncogenic mutations in
gliomas and are well-defined in the WHO 2021 classification of central nervous system …

MAFB promotes the malignant phenotypes by IGFBP6 in esophageal squamous cell carcinomas

S Zhang, T Gong, Y Nan, R Feng, Z Liu… - Experimental Cell …, 2022 - Elsevier
Esophageal squamous cell carcinoma (ESCC) is one of the most common malignant
diseases in the world. Although the somatic alterations have been fully identified, there are …

Loss of grand histone H3 lysine 27 trimethylation domains mediated transcriptional activation in esophageal squamous cell carcinoma

Y Jian, Q Jiang, G Tongyang, F Dandan… - NPJ Genomic …, 2021 - search.proquest.com
Trimethylation of histone H3 lysine 27 trimethylation (H3K27me3) may be recruited by
repressive Polycomb complexes to mediate gene silencing, which is critical for maintaining …