scTransSort: Transformers for intelligent annotation of cell types by gene embeddings

L Jiao, G Wang, H Dai, X Li, S Wang, T Song - Biomolecules, 2023 - mdpi.com
Single-cell transcriptomics is rapidly advancing our understanding of the composition of
complex tissues and biological cells, and single-cell RNA sequencing (scRNA-seq) holds …

meth-SemiCancer: a cancer subtype classification framework via semi-supervised learning utilizing DNA methylation profiles

JM Choi, C Park, H Chae - BMC bioinformatics, 2023 - Springer
Background Identification of the cancer subtype plays a crucial role to provide an accurate
diagnosis and proper treatment to improve the clinical outcomes of patients. Recent studies …

scSemiGCN: boosting cell-type annotation from noise-resistant graph neural networks with extremely limited supervision

J Yang, W Wang, X Zhang - Bioinformatics, 2024 - academic.oup.com
Motivation Cell-type annotation is fundamental in revealing cell heterogeneity for single-cell
data analysis. Although a host of works have been developed, the low signal-to-noise-ratio …

Variational and Explanatory Neural Networks for Encoding Cancer Profiles and Predicting Drug Responses

T Feng, R Gnanaolivu, A Safikhani, Y Liu… - arXiv preprint arXiv …, 2024 - arxiv.org
Human cancers present a significant public health challenge and require the discovery of
novel drugs through translational research. Transcriptomics profiling data that describes …

Discriminative Domain Adaption Network for Simultaneously Removing Batch Effects and Annotating Cell Types in Single-Cell RNA-Seq

Q Zhu, A Li, Z Zhang, C Zheng, J Zhao… - IEEE/ACM …, 2024 - ieeexplore.ieee.org
Machine learning techniques have become increasingly important in analyzing single-cell
RNA and identifying cell types, providing valuable insights into cellular development and …

人类发育细胞蓝图的现状和挑战

阙亦宸, 刘清泉, 徐一驰 - 遗传, 2024 - chinagene.cn
阐明人类胚胎发育的分子调控机制一直是科学家们努力攻克的重大生物学问题之一. 然而,
由于人类胚胎样本稀少, 样本解剖困难, 器官结构复杂等因素, 解析人类胚胎发育机制面临重重 …

Review of Machine Learning Approaches in the Analysis of Cancer Tumor Heterogeneity Using Single-Cell Sequencing

E Thomas, JM David - 2024 IEEE International Conference on …, 2024 - ieeexplore.ieee.org
This paper aims to review the current method-ologies, advancements, and future directions
in applications of Machine learning in Single-cell Sequencing of Cancer tumors, which will …

Cell-type classification of cancer single-cell RNA-seq data using the Subsemble ensemble-based machine learning classifier

D Chen, P Shooshtari - F1000Research, 2023 - f1000research.com
Background The advent of single-cell RNA sequencing (scRNA-seq) has provided a high-
resolution overview of the cellular heterogeneity of different tissue types. Manual cell type …