The role of the microbiota in periodontal disease
MA Curtis, PI Diaz, TE Van Dyke - Periodontology 2000, 2020 - Wiley Online Library
The last decade has witnessed unparalleled advances in our understanding of the
complexity of the oral microbiome and the compositional changes that occur in subgingival …
complexity of the oral microbiome and the compositional changes that occur in subgingival …
The nexus between periodontal inflammation and dysbiosis
TE Van Dyke, PM Bartold, EC Reynolds - Frontiers in immunology, 2020 - frontiersin.org
The nexus between periodontal inflammation and the polymicrobial biofilm in the gingival
sulcus is critical to understanding the pathobiology of periodontitis. Both play a major role in …
sulcus is critical to understanding the pathobiology of periodontitis. Both play a major role in …
Alterations of the human gut microbiome in liver cirrhosis
Liver cirrhosis occurs as a consequence of many chronic liver diseases that are prevalent
worldwide. Here we characterize the gut microbiome in liver cirrhosis by comparing 98 …
worldwide. Here we characterize the gut microbiome in liver cirrhosis by comparing 98 …
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
Whole-genome sequences are now available for many microbial species and clades,
however existing whole-genome alignment methods are limited in their ability to perform …
however existing whole-genome alignment methods are limited in their ability to perform …
Insights from 20 years of bacterial genome sequencing
Since the first two complete bacterial genome sequences were published in 1995, the
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …
Genome sequence-based species delimitation with confidence intervals and improved distance functions
Background For the last 25 years species delimitation in prokaryotes (Archaea and Bacteria)
was to a large extent based on DNA-DNA hybridization (DDH), a tedious lab procedure …
was to a large extent based on DNA-DNA hybridization (DDH), a tedious lab procedure …
MycoCosm portal: gearing up for 1000 fungal genomes
IV Grigoriev, R Nikitin, S Haridas, A Kuo… - Nucleic acids …, 2014 - academic.oup.com
MycoCosm is a fungal genomics portal (http://jgi. doe. gov/fungi), developed by the US
Department of Energy Joint Genome Institute to support integration, analysis and …
Department of Energy Joint Genome Institute to support integration, analysis and …
GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis
B Contreras-Moreira, P Vinuesa - Applied and environmental …, 2013 - Am Soc Microbiol
ABSTRACT GET_HOMOLOGUES is an open-source software package that builds on
popular orthology-calling approaches making highly customizable and detailed pangenome …
popular orthology-calling approaches making highly customizable and detailed pangenome …
Social networks predict gut microbiome composition in wild baboons
Social relationships have profound effects on health in humans and other primates, but the
mechanisms that explain this relationship are not well understood. Using shotgun …
mechanisms that explain this relationship are not well understood. Using shotgun …
Intergenomic Comparisons Highlight Modularity of the Denitrification Pathway and Underpin the Importance of Community Structure for N2O Emissions
Nitrous oxide (N2O) is a potent greenhouse gas and the predominant ozone depleting
substance. The only enzyme known to reduce N2O is the nitrous oxide reductase, encoded …
substance. The only enzyme known to reduce N2O is the nitrous oxide reductase, encoded …