Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …
Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …
Stacks: an analysis tool set for population genomics
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
Special features of RAD Sequencing data: implications for genotyping
Restriction site‐associated DNA Sequencing (RAD‐Seq) is an economical and efficient
method for SNP discovery and genotyping. As with other sequencing‐by‐synthesis …
method for SNP discovery and genotyping. As with other sequencing‐by‐synthesis …
Saturated linkage map construction in Rubus idaeususing genotyping by sequencing and genome-independent imputation
JA Ward, J Bhangoo, F Fernández-Fernández… - BMC genomics, 2013 - Springer
Background Rapid development of highly saturated genetic maps aids molecular breeding,
which can accelerate gain per breeding cycle in woody perennial plants such as Rubus …
which can accelerate gain per breeding cycle in woody perennial plants such as Rubus …
DNA fingerprinting in botany: past, present, future
H Nybom, K Weising, B Rotter - Investigative genetics, 2014 - Springer
Almost three decades ago Alec Jeffreys published his seminal Nature papers on the use of
minisatellite probes for DNA fingerprinting of humans (Jeffreys and colleagues Nature 1985 …
minisatellite probes for DNA fingerprinting of humans (Jeffreys and colleagues Nature 1985 …
Genome‐wide single‐generation signatures of local selection in the panmictic E uropean eel
JM Pujolar, MW Jacobsen, TD Als… - Molecular …, 2014 - Wiley Online Library
Next‐generation sequencing and the collection of genome‐wide data allow identifying
adaptive variation and footprints of directional selection. Using a large SNP data set from …
adaptive variation and footprints of directional selection. Using a large SNP data set from …
Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for …
Z Zhang, H Shang, Y Shi, L Huang, J Li, Q Ge, J Gong… - BMC plant biology, 2016 - Springer
Abstract Background Upland Cotton (Gossypium hirsutum) is one of the most important
worldwide crops it provides natural high-quality fiber for the industrial production and …
worldwide crops it provides natural high-quality fiber for the industrial production and …
Genome sequence of dwarf birch (Betula nana) and cross‐species RAD markers
N Wang, M Thomson, WJA Bodles… - Molecular …, 2013 - Wiley Online Library
New sequencing technologies allow development of genome‐wide markers for any genus
of ecological interest, including plant genera such as Betula (birch) that have previously …
of ecological interest, including plant genera such as Betula (birch) that have previously …
Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing
Background Genetic linkage maps are useful tools for mapping quantitative trait loci (QTL)
influencing variation in traits of interest in a population. Genotyping-by-sequencing …
influencing variation in traits of interest in a population. Genotyping-by-sequencing …