Chloroplast genomes: diversity, evolution, and applications in genetic engineering

H Daniell, CS Lin, M Yu, WJ Chang - Genome biology, 2016 - Springer
Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800
sequenced chloroplast genomes from a variety of land plants has enhanced our …

Strategies for complete plastid genome sequencing

AD Twyford, RW Ness - Molecular ecology resources, 2017 - Wiley Online Library
Plastid sequencing is an essential tool in the study of plant evolution. This high‐copy
organelle is one of the most technically accessible regions of the genome, and its sequence …

Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics

SD Zhang, JJ Jin, SY Chen, MW Chase… - New …, 2017 - Wiley Online Library
Phylogenetic relationships in Rosaceae have long been problematic because of frequent
hybridisation, apomixis and presumed rapid radiation, and their historical diversification has …

Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi‐gene analyses, and a functional model for the origin of monocots

TJ Givnish, A Zuluaga, D Spalink… - American Journal of …, 2018 - Wiley Online Library
Premise of the Study We present the first plastome phylogeny encompassing all 77 monocot
families, estimate branch support, and infer monocot‐wide divergence times and rates of …

[图书][B] Phylogeny and Evolution of the Angiosperms

D Soltis, P Soltis, P Endress, M Chase, S Manchester… - 2018 - books.google.com
Although they are relative latecomers on the evolutionary scene, having emerged only 135?
170 million years ago, angiosperms—or flowering plants—are the most diverse and species …

Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots

CF Barrett, WJ Baker, JR Comer, JG Conran… - New …, 2016 - Wiley Online Library
Despite progress based on multilocus, phylogenetic studies of the palms (order Arecales,
family Arecaceae), uncertainty remains in resolution/support among major clades and for the …

Molecular evolution of plastid genomes in parasitic flowering plants

S Wicke, J Naumann - Advances in botanical research, 2018 - Elsevier
Heterotrophic carbon acquisition is the most unusual lifestyle in plants, whereby the
heterotrophs obtain water, nutrients, and macromolecules from either another plant or a …

Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences

DF Xie, JB Tan, Y Yu, LJ Gui, DM Su, SD Zhou… - Annals of …, 2020 - academic.oup.com
Abstract Background and Aims The genus Allium L., one of the largest monocotyledonous
genera and one that includes many economically important crops with nutritional and …

Comparative chloroplast genomics of 34 species in subtribe Swertiinae (Gentianaceae) with implications for its phylogeny

L Yang, S Deng, Y Zhu, Q Da - BMC Plant Biology, 2023 - Springer
Abstract Background Subtribe Swertiinae, a medicinally significant and highly speciose
Subtribe of family Gentianaceae. Despite previous extensive studies based on both …

Phylogenomic resolution of order-and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes

PR Timilsena, EK Wafula, CF Barrett… - Frontiers in Plant …, 2022 - frontiersin.org
We assess relationships among 192 species in all 12 monocot orders and 72 of 77 families,
using 602 conserved single-copy (CSC) genes and 1375 benchmarking single-copy …