Glycoproteomics

I Bagdonaite, SA Malaker, DA Polasky… - Nature Reviews …, 2022 - nature.com
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …

[HTML][HTML] Proteogenomic characterization of pancreatic ductal adenocarcinoma

L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage… - Cell, 2021 - cell.com
Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive cancer with poor patient
survival. Toward understanding the underlying molecular alterations that drive PDAC …

Towards structure-focused glycoproteomics

A Chernykh, R Kawahara… - Biochemical Society …, 2021 - portlandpress.com
Facilitated by advances in the separation sciences, mass spectrometry and informatics,
glycoproteomics, the analysis of intact glycopeptides at scale, has recently matured enabling …

Optimal Dissociation Methods Differ for N- and O-Glycopeptides

NM Riley, SA Malaker, MD Driessen… - Journal of proteome …, 2020 - ACS Publications
Site-specific characterization of glycosylation requires intact glycopeptide analysis, and
recent efforts have focused on how to best interrogate glycopeptides using tandem mass …

Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics

MEH White, LR Sinn, DM Jones, J de Folter… - Nature Biomedical …, 2024 - nature.com
Protein glycosylation, a complex and heterogeneous post-translational modification that is
frequently dysregulated in disease, has been difficult to analyse at scale. Here we report a …

Integrated proteomic and glycoproteomic characterization of human high-grade serous ovarian carcinoma

Y Hu, J Pan, P Shah, M Ao, SN Thomas, Y Liu, L Chen… - Cell reports, 2020 - cell.com
Many gene products exhibit great structural heterogeneity because of an array of
modifications. These modifications are not directly encoded in the genomic template but …

Predicting glycan structure from tandem mass spectrometry via deep learning

J Urban, C Jin, KA Thomsson, NG Karlsson, CM Ives… - Nature …, 2024 - nature.com
Glycans constitute the most complicated post-translational modification, modulating protein
activity in health and disease. However, structural annotation from tandem mass …

Characterization of core fucosylation via sequential enzymatic treatments of intact glycopeptides and mass spectrometry analysis

L Cao, TM Lih, Y Hu, M Schnaubelt, SY Chen… - Nature …, 2022 - nature.com
Core fucosylation of N-linked glycoproteins has been linked to the functions of glycoproteins
in physiological and pathological processes. However, quantitative characterization of core …

Comparison of enrichment methods for intact N-and O-linked glycopeptides using strong anion exchange and hydrophilic interaction liquid chromatography

W Yang, P Shah, Y Hu, S Toghi Eshghi, S Sun… - Analytical …, 2017 - ACS Publications
Heterogeneity of protein glycosylation poses great challenges for analysis that is key to
understand structure and function of glycoproteins. Resolving this conundrum requires …

Multi-scale signaling and tumor evolution in high-grade gliomas

J Liu, S Cao, KJ Imbach, MA Gritsenko, TSM Lih… - Cancer cell, 2024 - cell.com
Although genomic anomalies in glioblastoma (GBM) have been well studied for over a
decade, its 5-year survival rate remains lower than 5%. We seek to expand the molecular …