Photosynthesis: basics, history and modelling

A Stirbet, D Lazár, Y Guo, G Govindjee - Annals of botany, 2020 - academic.oup.com
Background With limited agricultural land and increasing human population, it is essential to
enhance overall photosynthesis and thus productivity. Oxygenic photosynthesis begins with …

Chlorophyll a fluorescence induction: a personal perspective of the thermal phase, the J–I–P rise

A Stirbet, Govindjee - Photosynthesis research, 2012 - Springer
The fast (up to 1 s) chlorophyll (Chl) a fluorescence induction (FI) curve, measured under
saturating continuous light, has a photochemical phase, the O–J rise, related mainly to the …

Improving photosynthesis and yield potential in cereal crops by targeted genetic manipulation: prospects, progress and challenges

RT Furbank, WP Quick, XRR Sirault - Field Crops Research, 2015 - Elsevier
Since the ground breaking work of Norman Borlaug in the 1960s produced large increases
in yields of our major cereal crops, we have seen a gradual decline in annual yield progress …

Synthetic biology as it relates to CAM photosynthesis: challenges and opportunities

HC DePaoli, AM Borland, GA Tuskan… - Journal of …, 2014 - academic.oup.com
To meet future food and energy security needs, which are amplified by increasing
population growth and reduced natural resource availability, metabolic engineering efforts …

Simulations show that a small part of variable chlorophyll a fluorescence originates in photosystem I and contributes to overall fluorescence rise

D Lazár - Journal of Theoretical Biology, 2013 - Elsevier
Photosystem I (PSI) is generally assumed not to emit variable chlorophyll (Chl) fluorescence
during light-induced Chl fluorescence rise (FLR), which occurs in a time window upto 1 s …

Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth

R Steuer, H Knoop, R Machné - Journal of experimental botany, 2012 - academic.oup.com
Cyanobacteria are phototrophic microorganisms of global importance and have recently
attracted increasing attention due to their capability to convert sunlight and atmospheric CO2 …

Modeling the calvin-benson cycle

J Jablonsky, H Bauwe, O Wolkenhauer - BMC Systems Biology, 2011 - Springer
Abstract Background Modeling the Calvin-Benson cycle has a history in the field of
theoretical biology. Anyone who intends to model this system will look at existing models to …

Appropriate time interval of PPFD measurement to estimate daily photosynthetic gain

K Murakami, T Jishi - Functional Plant Biology, 2021 - CSIRO Publishing
Photosynthetic models sometimes incorporate meteorological elements typically recorded at
a time interval of 10 min or 1 h. Because these data are calculated by averaging …

Formal biochemical space with semantics in kappa and BNGL

T Děd, D Šafránek, M Troják, M Klement… - Electronic Notes in …, 2016 - Elsevier
Biochemical Space (BCS) has been introduced as a semi-formal notation for reaction
networks of biological processes. It provides a concise mapping of mathematical models to …

Biochemical space: a framework for systemic annotation of biological models

M Klement, T Děd, D Šafránek, J Červený… - Electronic Notes in …, 2014 - Elsevier
In this tool paper, we target the problem of unique annotation of organism-specific
computational models presented in a public model database. In particular, we present …