Self-supervised learning of graph neural networks: A unified review

Y Xie, Z Xu, J Zhang, Z Wang… - IEEE transactions on …, 2022 - ieeexplore.ieee.org
Deep models trained in supervised mode have achieved remarkable success on a variety of
tasks. When labeled samples are limited, self-supervised learning (SSL) is emerging as a …

Graph representation learning in bioinformatics: trends, methods and applications

HC Yi, ZH You, DS Huang… - Briefings in …, 2022 - academic.oup.com
Graph is a natural data structure for describing complex systems, which contains a set of
objects and relationships. Ubiquitous real-life biomedical problems can be modeled as …

Score-based generative modeling of graphs via the system of stochastic differential equations

J Jo, S Lee, SJ Hwang - International conference on …, 2022 - proceedings.mlr.press
Generating graph-structured data requires learning the underlying distribution of graphs.
Yet, this is a challenging problem, and the previous graph generative methods either fail to …

Explainability in graph neural networks: A taxonomic survey

H Yuan, H Yu, S Gui, S Ji - IEEE transactions on pattern …, 2022 - ieeexplore.ieee.org
Deep learning methods are achieving ever-increasing performance on many artificial
intelligence tasks. A major limitation of deep models is that they are not amenable to …

Graph neural networks for natural language processing: A survey

L Wu, Y Chen, K Shen, X Guo, H Gao… - … and Trends® in …, 2023 - nowpublishers.com
Deep learning has become the dominant approach in addressing various tasks in Natural
Language Processing (NLP). Although text inputs are typically represented as a sequence …

On explainability of graph neural networks via subgraph explorations

H Yuan, H Yu, J Wang, K Li, S Ji - … conference on machine …, 2021 - proceedings.mlr.press
We consider the problem of explaining the predictions of graph neural networks (GNNs),
which otherwise are considered as black boxes. Existing methods invariably focus on …

Periodic graph transformers for crystal material property prediction

K Yan, Y Liu, Y Lin, S Ji - Advances in Neural Information …, 2022 - proceedings.neurips.cc
We consider representation learning on periodic graphs encoding crystal materials. Different
from regular graphs, periodic graphs consist of a minimum unit cell repeating itself on a …

Trustworthy ai: A computational perspective

H Liu, Y Wang, W Fan, X Liu, Y Li, S Jain, Y Liu… - ACM Transactions on …, 2022 - dl.acm.org
In the past few decades, artificial intelligence (AI) technology has experienced swift
developments, changing everyone's daily life and profoundly altering the course of human …

Evaluating explainability for graph neural networks

C Agarwal, O Queen, H Lakkaraju, M Zitnik - Scientific Data, 2023 - nature.com
As explanations are increasingly used to understand the behavior of graph neural networks
(GNNs), evaluating the quality and reliability of GNN explanations is crucial. However …

Good: A graph out-of-distribution benchmark

S Gui, X Li, L Wang, S Ji - Advances in Neural Information …, 2022 - proceedings.neurips.cc
Abstract Out-of-distribution (OOD) learning deals with scenarios in which training and test
data follow different distributions. Although general OOD problems have been intensively …