Target identification and mechanism of action in chemical biology and drug discovery

M Schenone, V Dančík, BK Wagner… - Nature chemical …, 2013 - nature.com
Target-identification and mechanism-of-action studies have important roles in small-
molecule probe and drug discovery. Biological and technological advances have resulted in …

Can we beat the biotin–avidin pair?: cucurbit [7] uril-based ultrahigh affinity host–guest complexes and their applications

D Shetty, JK Khedkar, KM Park, K Kim - Chemical Society Reviews, 2015 - pubs.rsc.org
The design of synthetic, monovalent host–guest molecular recognition pairs is still
challenging and of particular interest to inquire into the limits of the affinity that can be …

Target identification for small bioactive molecules: finding the needle in the haystack

S Ziegler, V Pries, C Hedberg… - Angewandte Chemie …, 2013 - Wiley Online Library
Identification and confirmation of bioactive small‐molecule targets is a crucial, often decisive
step both in academic and pharmaceutical research. Through the development and …

Target profiling of small molecules by chemical proteomics

U Rix, G Superti-Furga - Nature chemical biology, 2009 - nature.com
The medical and pharmaceutical communities are facing a dire need for new druggable
targets, while, paradoxically, the targets of some drugs that are in clinical use or …

Cleavable linkers in chemical biology

G Leriche, L Chisholm, A Wagner - Bioorganic & medicinal chemistry, 2012 - Elsevier
Interest in cleavable linkers is growing due to the rapid development and expansion of
chemical biology. The chemical constrains imposed by the biological conditions cause …

Cleavable biotin probes for labeling of biomolecules via azide− alkyne cycloaddition

J Szychowski, A Mahdavi, JJL Hodas… - Journal of the …, 2010 - ACS Publications
The azide− alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of
proteins, nucleic acids, glycans, and lipids. In some labeling experiments, eg, in proteomic …

Activity-based protein profiling for the functional annotation of enzymes

KT Barglow, BF Cravatt - Nature methods, 2007 - nature.com
Activity-based protein profiling (ABPP), the use of active site-directed chemical probes to
monitor enzyme function in complex biological systems, is emerging as a powerful post …

Activity-based probes as a tool for functional proteomic analysis of proteases

M Fonović, M Bogyo - Expert review of proteomics, 2008 - Taylor & Francis
Traditional proteomics methodology allows global analysis of protein abundance but does
not provide information on the regulation of protein activity. Proteases, in particular, are …

Supramolecular fishing for plasma membrane proteins using an ultrastable synthetic host–guest binding pair

DW Lee, KM Park, M Banerjee, SH Ha, T Lee, K Suh… - Nature …, 2011 - nature.com
Membrane proteomics, the large-scale global analysis of membrane proteins, is often
constrained by the efficiency of separating and extracting membrane proteins. Recent …

Syndecan-4 is a receptor for clathrin-mediated endocytosis of arginine-rich cell-penetrating peptides

Y Kawaguchi, T Takeuchi, K Kuwata… - Bioconjugate …, 2016 - ACS Publications
Arginine-rich cell-penetrating peptides (CPPs) such as Tat and oligoarginine peptides have
been widely used as carriers for intracellular delivery of bioactive molecules. Despite …