Pteros: Fast and easy to use open‐source C++ library for molecular analysis
SO Yesylevskyy - Journal of Computational Chemistry, 2012 - Wiley Online Library
An open‐source Pteros library for molecular modeling and analysis of molecular dynamics
trajectories for C++ programming language is introduced. Pteros provides a number of …
trajectories for C++ programming language is introduced. Pteros provides a number of …
Genetic characteristics of SARS-CoV-2 virus variants observed upon three waves of the COVID-19 pandemic in Ukraine between February 2021–January 2022
GV Gerashchenko, NV Hryshchenko, NS Melnichuk… - Heliyon, 2024 - cell.com
The aim of our study was to identify and characterize the SARS-CoV-2 variants in COVID-19
patients' samples collected from different regions of Ukraine to determine the relationship …
patients' samples collected from different regions of Ukraine to determine the relationship …
Enhancing students' creativity in physics classroom using virtual laboratory
The virtual laboratory can be used to support an experiment of physics for visualizing
abstract concepts. This article discusses the effects of virtual laboratory towards …
abstract concepts. This article discusses the effects of virtual laboratory towards …
Asymmetric structure and domain binding interfaces of human tyrosyl‐tRNA synthetase studied by molecular dynamics simulations
OV Savytskyi, SO Yesylevskyy… - Journal of Molecular …, 2013 - Wiley Online Library
Human tyrosyl‐tRNA synthetase (HsTyrRS) is composed of two structural modules: N‐
terminal catalytic core and an EMAP II‐like C‐terminal domain. The structures of these …
terminal catalytic core and an EMAP II‐like C‐terminal domain. The structures of these …
Integrated tools for molecular dynamics simulation data analysis in the MolDynGrid virtual laboratory
OV Savytskyi, IA Sliusar… - Proceedings of the …, 2011 - ieeexplore.ieee.org
Existing molecular modeling software and different techniques of molecular dynamics
trajectories analysis were evaluated in terms of subsequent integration into the MolDynGrid …
trajectories analysis were evaluated in terms of subsequent integration into the MolDynGrid …
Structural states of the flexible catalytic loop of M. tuberculosis tyrosyl-tRNA synthetase in different enzyme–substrate complexes
VV Mykuliak, AI Dragan, AI Kornelyuk - European Biophysics Journal, 2014 - Springer
Tyrosyl-tRNA synthetase from Mycobacterium tuberculosis (Mt TyrRS) is an enzyme that
belongs to class I of aminoacyl-tRNA synthetases, which catalyze the attachment of l …
belongs to class I of aminoacyl-tRNA synthetases, which catalyze the attachment of l …
Computational modeling and molecular dynamics simulations of mammalian cytoplasmic tyrosyl-tRNA synthetase and its complexes with substrates
VO Kravchuk, OV Savytskyi, KO Odynets… - Journal of …, 2017 - Taylor & Francis
Cytoplasmic tyrosyl-tRNA synthetase (TyrRS) is one of the key enzymes of protein
biosynthesis. TyrRSs of pathogenic organisms have gained attention as potential targets for …
biosynthesis. TyrRSs of pathogenic organisms have gained attention as potential targets for …
A molecular dynamics simulation study of amino acid selectivity of LeuRS editing domain from Thermus thermophilus
The accuracy of protein synthesis is provided by the editing functions of aminoacyl-tRNA
synthetases (aaRSs), a mechanism that eliminates misactivated amino acids or mischarged …
synthetases (aaRSs), a mechanism that eliminates misactivated amino acids or mischarged …
Molecular modeling and molecular dynamics simulation study of archaeal leucyl-tRNA synthetase in complex with different mischarged tRNA in editing conformation
Aminoacyl-tRNA synthetases (aaRSs) play important roles in maintaining the accuracy of
protein synthesis. Some aaRSs accomplish this via editing mechanisms, among which …
protein synthesis. Some aaRSs accomplish this via editing mechanisms, among which …
[PDF][PDF] PTI-1: novel way to oncogenicity
Aim. The prostate tumor-inducing oncogene (PTI-1), presumably encoding a truncated form
of eukaryotic translation elongation factor 1A1 (eEF1A1), was discovered as a gene …
of eukaryotic translation elongation factor 1A1 (eEF1A1), was discovered as a gene …