Empirical and philosophical problems with the subspecies rank

FT Burbrink, BI Crother, CM Murray… - Ecology and …, 2022 - Wiley Online Library
Species‐level taxonomy derives from empirical sources (data and techniques) that assess
the existence of spatiotemporal evolutionary lineages via various species “concepts.” These …

Post-molecular systematics and the future of phylogenetics

RA Pyron - Trends in Ecology & Evolution, 2015 - cell.com
The time is past when a research program in systematics should be based on only a few
genes, extant taxa, and ultrametric trees. Cheap genome sequencing, powerful statistical …

Comparison of methods for molecular species delimitation across a range of speciation scenarios

A Luo, C Ling, SYW Ho, CD Zhu - Systematic Biology, 2018 - academic.oup.com
Species are fundamental units in biological research and can be defined on the basis of
various operational criteria. There has been growing use of molecular approaches for …

Unguided species delimitation using DNA sequence data from multiple loci

Z Yang, B Rannala - Molecular Biology and Evolution, 2014 - academic.oup.com
A method was developed for simultaneous Bayesian inference of species delimitation and
species phylogeny using the multispecies coalescent model. The method eliminates the …

Species delimitation in herpetology

DM Hillis - Journal of Herpetology, 2019 - meridian.allenpress.com
The discovery and delimitation of species has changed dramatically over time. Species
delimitation practices became more thorough and formal in the 1900s with the introduction …

The multispecies coalescent over-splits species in the case of geographically widespread taxa

EA Chambers, DM Hillis - Systematic Biology, 2020 - academic.oup.com
Many recent species delimitation studies rely exclusively on limited analyses of genetic data
analyzed under the multispecies coalescent (MSC) model, and results from these studies …

Gene flow creates a mirage of cryptic species in a Southeast Asian spotted stream frog complex

KO Chan, CR Hutter, PL Wood Jr, LL Grismer… - Molecular …, 2020 - Wiley Online Library
Most new cryptic species are described using conventional tree‐and distance‐based
species delimitation methods (SDMs), which rely on phylogenetic arrangements and …

Biodiversity and the species concept—lineages are not enough

JV Freudenstein, MB Broe, RA Folk… - Systematic Biology, 2017 - academic.oup.com
The nature and definition of species continue to be matters of debate. Current views of
species often focus on their nature as lineages—maximal reproductive communities through …

The herpetofauna of Veracruz, Mexico: composition, distribution, and conservation status

LA Torres-Hernández, A Ramírez-Bautista… - Amphibian and Reptile …, 2021 - kb.gcsu.edu
The herpetofauna of the state of Veracruz, Mexico, currently consists of 359 species,
including 76 anurans, 45 caudates, one caecilian, one crocodylian, 217 squamates, and 19 …

The importance of contact zones for distinguishing interspecific from intraspecific geographic variation

EA Chambers, TL Marshall, DM Hillis - Systematic Biology, 2023 - academic.oup.com
With limited sampling, geographic variation within a single species can be difficult to
distinguish from interspecific variation, confounding our ability to draw accurate species …