Fundamentals and methods for T‐and B‐cell epitope prediction

JL Sanchez-Trincado… - Journal of …, 2017 - Wiley Online Library
Adaptive immunity is mediated by T‐and B‐cells, which are immune cells capable of
developing pathogen‐specific memory that confers immunological protection. Memory and …

An introduction to B‐cell epitope mapping and in silico epitope prediction

L Potocnakova, M Bhide… - Journal of immunology …, 2016 - Wiley Online Library
Identification of B‐cell epitopes is a fundamental step for development of epitope‐based
vaccines, therapeutic antibodies, and diagnostic tools. Epitope‐based antibodies are …

BepiPred‐3.0: Improved B‐cell epitope prediction using protein language models

JN Clifford, MH Høie, S Deleuran, B Peters… - Protein …, 2022 - Wiley Online Library
B‐cell epitope prediction tools are of great medical and commercial interest due to their
practical applications in vaccine development and disease diagnostics. The introduction of …

Template-based protein structure modeling using the RaptorX web server

M Källberg, H Wang, S Wang, J Peng, Z Wang, H Lu… - Nature protocols, 2012 - nature.com
A key challenge of modern biology is to uncover the functional role of the protein entities that
compose cellular proteomes. To this end, the availability of reliable three-dimensional …

The structural basis of antibody-antigen recognition

I Sela-Culang, V Kunik, Y Ofran - Frontiers in immunology, 2013 - frontiersin.org
The function of antibodies (Abs) involves specific binding to antigens (Ags) and activation of
other components of the immune system to fight pathogens. The six hypervariable loops …

ElliPro: a new structure-based tool for the prediction of antibody epitopes

J Ponomarenko, HH Bui, W Li, N Fusseder… - BMC …, 2008 - Springer
Background Reliable prediction of antibody, or B-cell, epitopes remains challenging yet
highly desirable for the design of vaccines and immunodiagnostics. A correlation between …

Prediction of continuous B‐cell epitopes in an antigen using recurrent neural network

S Saha, GPS Raghava - Proteins: Structure, Function, and …, 2006 - Wiley Online Library
B‐cell epitopes play a vital role in the development of peptide vaccines, in diagnosis of
diseases, and also for allergy research. Experimental methods used for characterizing …

Prediction of residues in discontinuous B‐cell epitopes using protein 3D structures

P Haste Andersen, M Nielsen, OLE Lund - Protein Science, 2006 - Wiley Online Library
Discovery of discontinuous B‐cell epitopes is a major challenge in vaccine design. Previous
epitope prediction methods have mostly been based on protein sequences and are not very …

Understanding the significance and implications of antibody numbering and antigen-binding surface/residue definition

M Dondelinger, P Filée, E Sauvage, B Quinting… - Frontiers in …, 2018 - frontiersin.org
Monoclonal antibodies are playing an increasing role in both human and animal health.
Different strategies of protein and chemical engineering, including humanization techniques …

Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics

R Khetan, R Curtis, CM Deane, JT Hadsund, U Kar… - MAbs, 2022 - Taylor & Francis
Therapeutic monoclonal antibodies and their derivatives are key components of clinical
pipelines in the global biopharmaceutical industry. The availability of large datasets of …