A review on machine learning principles for multi-view biological data integration

Y Li, FX Wu, A Ngom - Briefings in bioinformatics, 2018 - academic.oup.com
Driven by high-throughput sequencing techniques, modern genomic and clinical studies are
in a strong need of integrative machine learning models for better use of vast volumes of …

Correlation and association analyses in microbiome study integrating multiomics in health and disease

Y Xia - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …

Diet-driven microbial ecology underpins associations between cancer immunotherapy outcomes and the gut microbiome

RC Simpson, ER Shanahan, M Batten, ILM Reijers… - Nature medicine, 2022 - nature.com
The gut microbiota shapes the response to immune checkpoint inhibitors (ICIs) in cancer,
however dietary and geographic influences have not been well-studied in prospective trials …

[PDF][PDF] Applied predictive modeling

M Kuhn - 2013 - mathematics.foi.hr
This is a book on data analysis with a specific focus on the practice of predictive modeling.
The term predictive modeling may stir associations such as machine learning, pattern …

So you think you can PLS-DA?

D Ruiz-Perez, H Guan, P Madhivanan, K Mathee… - BMC …, 2020 - Springer
Abstract Background Partial Least-Squares Discriminant Analysis (PLS-DA) is a popular
machine learning tool that is gaining increasing attention as a useful feature selector and …

Helminth infection promotes colonization resistance via type 2 immunity

D Ramanan, R Bowcutt, SC Lee, MS Tang, ZD Kurtz… - Science, 2016 - science.org
Increasing incidence of inflammatory bowel diseases, such as Crohn's disease, in
developed nations is associated with changes to the microbial environment, such as …

In-vivo and ex-vivo tissue analysis through hyperspectral imaging techniques: revealing the invisible features of cancer

M Halicek, H Fabelo, S Ortega, GM Callico, B Fei - Cancers, 2019 - mdpi.com
In contrast to conventional optical imaging modalities, hyperspectral imaging (HSI) is able to
capture much more information from a certain scene, both within and beyond the visual …

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

KA Lê Cao, S Boitard, P Besse - BMC bioinformatics, 2011 - Springer
Background Variable selection on high throughput biological data, such as gene expression
or single nucleotide polymorphisms (SNPs), becomes inevitable to select relevant …

Microbiome multi-omics network analysis: statistical considerations, limitations, and opportunities

D Jiang, CR Armour, C Hu, M Mei, C Tian… - Frontiers in …, 2019 - frontiersin.org
The advent of large-scale microbiome studies affords newfound analytical opportunities to
understand how these communities of microbes operate and relate to their environment …

[图书][B] Bayesian disease mapping: hierarchical modeling in spatial epidemiology

AB Lawson - 2018 - taylorfrancis.com
Since the publication of the second edition, many new Bayesian tools and methods have
been developed for space-time data analysis, the predictive modeling of health outcomes …