Bioorthogonal reactions of triarylphosphines and related analogues

TK Heiss, RS Dorn, JA Prescher - Chemical reviews, 2021 - ACS Publications
Bioorthogonal phosphines were introduced in the context of the Staudinger ligation over 20
years ago. Since that time, phosphine probes have been used in myriad applications to tag …

Fluorescent nucleoside analogs: probes for investigating nucleic acid structure and function

AA Tanpure, MG Pawar… - Israel Journal of …, 2013 - Wiley Online Library
Base‐modified fluorescent nucleoside analog probes have been very valuable in the study
of nucleic acid structure and function. Many of them structurally resemble natural bases, and …

A versatile toolbox for posttranscriptional chemical labeling and imaging of RNA

AA Sawant, AA Tanpure, PP Mukherjee… - Nucleic acids …, 2016 - academic.oup.com
Cellular RNA labeling strategies based on bioorthogonal chemical reactions are much less
developed in comparison to glycan, protein and DNA due to its inherent instability and lack …

Bioorthogonal site-specific labeling of the 5′-cap structure in eukaryotic mRNAs

JM Holstein, D Schulz, A Rentmeister - Chemical Communications, 2014 - pubs.rsc.org
We present a chemo-enzymatic approach for site-specific labeling of 5′-capped RNAs
based on bioorthogonal chemistry. A trimethylguanosine synthase was engineered to …

Metabolic incorporation of azide functionality into cellular RNA

S Nainar, S Beasley, M Fazio, M Kubota, N Dai… - …, 2016 - Wiley Online Library
Real‐time tracking of RNA expression can provide insight into the mechanisms used to
generate cellular diversity, as well as help determine the underlying causes of disease. Here …

Single molecule fluorescence approaches shed light on intracellular RNAs

S Pitchiaya, LA Heinicke, TC Custer… - Chemical reviews, 2014 - ACS Publications
The eukaryotic cell is highly complex. Ever since Robert Hooke discovered “cells” in 1665
when training his comparably primitive microscope on a sliver of cork, scientists have aimed …

Post-transcriptional labeling by using Suzuki–Miyaura cross-coupling generates functional RNA probes

MB Walunj, AA Tanpure, SG Srivatsan - Nucleic Acids Research, 2018 - academic.oup.com
Pd-catalyzed CC bond formation, an important vertebra in the spine of synthetic chemistry, is
emerging as a valuable chemoselective transformation for post-synthetic functionalization of …

Chloroacetamide‐Modified Nucleotide and RNA for Bioconjugations and Cross‐Linking with RNA‐Binding Proteins

M Brunderová, M Krömer, M Vlková… - Angewandte Chemie …, 2023 - Wiley Online Library
Reactive RNA probes are useful for studying and identifying RNA‐binding proteins. To that
end, we designed and synthesized chloroacetamide‐linked 7‐deaza‐ATP which was a …

Bioorthogonal chemistry-based RNA labeling technologies: evolution and current state

JT George, SG Srivatsan - Chemical Communications, 2020 - pubs.rsc.org
To understand the structure and ensuing function of RNA in various cellular processes,
researchers greatly rely on traditional as well as contemporary labeling technologies to …

Azide and trans-cyclooctene dUTPs: incorporation into DNA probes and fluorescent click-labelling

X Ren, AH El-Sagheer, T Brown - Analyst, 2015 - pubs.rsc.org
5-Azidomethyl dUTP and two 5-trans-cyclooctene dUTPs with different linkers between the
TCO and the uracil base have been incorporated into DNA by primer extension, reverse …