Cyclophilin D as a drug target

PC Waldmeier, K Zimmermann, T Qian… - Current medicinal …, 2003 - ingentaconnect.com
The mitochondrial permeability transition (MPT) plays an important role in damage-induced
cell death, and agents inhibiting the MPT may have a therapeutic potential for treating …

Drug discovery beyond the rule of 5-Opportunities and challenges

BC Doak, J Kihlberg - Expert Opinion on Drug Discovery, 2017 - Taylor & Francis
Targets that are Ldifficult-to-drugL typically have binding sites that are large, highly lipophilic
or polar, flexible, flat or featureless [1]. They contain few opportunities for high affinity …

Torsion angle dynamics for NMR structure calculation with the new program DYANA

P Güntert, C Mumenthaler, K Wüthrich - Journal of molecular biology, 1997 - Elsevier
The new program Dyana (DYnamics Algorithm for Nmr Applications) for efficient calculation
of three-dimensional protein and nucleic acid structures from distance constraints and …

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

G Cornilescu, F Delaglio, A Bax - Journal of biomolecular NMR, 1999 - Springer
Chemical shifts of backbone atoms in proteins are exquisitely sensitive to local
conformation, and homologous proteins show quite similar patterns of secondary chemical …

Intrinsic dynamics of an enzyme underlies catalysis

EZ Eisenmesser, O Millet, W Labeikovsky… - Nature, 2005 - nature.com
A unique feature of chemical catalysis mediated by enzymes is that the catalytically reactive
atoms are embedded within a folded protein. Although current understanding of enzyme …

Enzyme dynamics during catalysis

EZ Eisenmesser, DA Bosco, M Akke, D Kern - Science, 2002 - science.org
Internal protein dynamics are intimately connected to enzymatic catalysis. However, enzyme
motions linked to substrate turnover remain largely unknown. We have studied dynamics of …

RefDB: a database of uniformly referenced protein chemical shifts

H Zhang, S Neal, DS Wishart - Journal of biomolecular NMR, 2003 - Springer
RefDB is a secondary database of reference-corrected protein chemical shifts derived from
the BioMagResBank (BMRB). The database was assembled by using a recently developed …

Transverse Relaxation-Optimized Spectroscopy (TROSY) for NMR Studies of Aromatic Spin Systems in 13C-Labeled Proteins

K Pervushin, R Riek, G Wider… - Journal of the American …, 1998 - ACS Publications
Transverse relaxation-optimized spectroscopy (TROSY) yields greatly improved sensitivity
for multidimensional NMR experiments with aromatic spin systems in proteins. TROSY …

Validation of protein models derived from experiment

RA Laskowski, MW MacArthur, JM Thornton - Current opinion in structural …, 1998 - Elsevier
The growing number of protein structures solved at atomic resolution holds the promise of
further improvements in geometry-based validation parameters. Additionally, the estimated …

Hepatitis C virus NS5A protein is a substrate for the peptidyl-prolyl cis/trans isomerase activity of cyclophilins A and B

X Hanoulle, A Badillo, JM Wieruszeski… - Journal of Biological …, 2009 - ASBMB
We report here a biochemical and structural characterization of domain 2 of the
nonstructural 5A protein (NS5A) from the JFH1 Hepatitis C virus strain and its interactions …