Artificial intelligence-assisted diagnostic cytology and genomic testing for hematologic disorders

L Gedefaw, CF Liu, RKL Ip, HF Tse, MHY Yeung… - Cells, 2023 - mdpi.com
Artificial intelligence (AI) is a rapidly evolving field of computer science that involves the
development of computational programs that can mimic human intelligence. In particular …

Advanced analytical and informatic strategies for metabolite annotation in untargeted metabolomics

Y Cai, Z Zhou, ZJ Zhu - TrAC Trends in Analytical Chemistry, 2023 - Elsevier
Liquid chromatography–mass spectrometry (LC–MS)-based untargeted metabolomics is
constantly challenged by large-scale and unambiguous metabolite annotation in complex …

Machine learning-assisted identification of environmental pollutants by liquid chromatography coupled with high-resolution mass spectrometry

H Wang, L Zhong, W Su, T Ruan, G Jiang - TrAC Trends in Analytical …, 2024 - Elsevier
Chemical exposure can be linked with various adverse effects, but the causal association is
still poorly understood. To meet the challenge, non-target screening (NTS) based on liquid …

Neural network in food analytics

P Ma, Z Zhang, X Jia, X Peng, Z Zhang… - Critical Reviews in …, 2024 - Taylor & Francis
Neural network (ie deep learning, NN)-based data analysis techniques have been listed as
a pivotal opportunity to protect the integrity and safety of the global food supply chain and …

Constructing collective variables using invariant learned representations

M Sipka, A Erlebach, L Grajciar - Journal of Chemical Theory and …, 2023 - ACS Publications
On the time scales accessible to atomistic numerical modeling, chemical reactions are
considered rare events. Therefore, the atomistic simulations are commonly biased along a …

Retention time prediction with message-passing neural networks

S Osipenko, E Nikolaev, Y Kostyukevich - Separations, 2022 - mdpi.com
Retention time prediction, facilitated by advances in machine learning, has become a useful
tool in untargeted LC-MS applications. State-of-the-art approaches include graph neural …

Prediction of Retention Time and Collision Cross Section (CCSH+, CCSH–, and CCSNa+) of Emerging Contaminants Using Multiple Adaptive Regression Splines

A Celma, R Bade, JV Sancho… - Journal of chemical …, 2022 - ACS Publications
Ultra-high performance liquid chromatography coupled to ion mobility separation and high-
resolution mass spectrometry instruments have proven very valuable for screening of …

Deep graph convolutional network for small-molecule retention time prediction

Q Kang, P Fang, S Zhang, H Qiu, Z Lan - Journal of Chromatography A, 2023 - Elsevier
The retention time (RT) is a crucial source of data for liquid chromatography-mass
spectrometry (LCMS). A model that can accurately predict the RT for each molecule would …

Retention Time Prediction through Learning from a Small Training Data Set with a Pretrained Graph Neural Network

Y Kwon, H Kwon, J Han, M Kang, JY Kim… - Analytical …, 2023 - ACS Publications
Graph neural networks (GNNs) have shown remarkable performance in predicting the
retention time (RT) for small molecules. However, the training data set for a particular target …

Graph-Based Modeling and Molecular Dynamics for Ion Activity Coefficient Prediction in Polymeric Ion-Exchange Membranes

P Naghshnejad, G Theis Marchan… - Industrial & …, 2024 - ACS Publications
The partitioning of ions between polymeric ion-exchange membranes (IEMs) and the
surrounding liquid is governed by the activity coefficients of the ions, which, in turn …