Introducing memory in coarse-grained molecular simulations

V Klippenstein, M Tripathy, G Jung… - The Journal of …, 2021 - ACS Publications
Preserving the correct dynamics at the coarse-grained (CG) level is a pressing problem in
the development of systematic CG models in soft matter simulation. Starting from the seminal …

Power functional theory for many-body dynamics

M Schmidt - Reviews of Modern Physics, 2022 - APS
The rich and diverse dynamics of particle-based systems ultimately originates from the
coupling of their degrees of freedom via internal interactions. To arrive at a tractable …

Coarse-grained modelling out of equilibrium

T Schilling - Physics Reports, 2022 - Elsevier
Abstract Active matter, responsive (“smart”) materials and materials under time-dependent
load are systems out of thermal equilibrium. To construct coarse-grained models for such …

[HTML][HTML] On detailed balance in nonadiabatic dynamics: From spin spheres to equilibrium ellipsoids

G Amati, JE Runeson, JO Richardson - The Journal of Chemical …, 2023 - pubs.aip.org
Trajectory-based methods that propagate classical nuclei on multiple quantum electronic
states are often used to simulate nonadiabatic processes in the condensed phase. A long …

Jerky active matter: a phase field crystal model with translational and orientational memory

M Te Vrugt, J Jeggle, R Wittkowski - New Journal of Physics, 2021 - iopscience.iop.org
Most field theories for active matter neglect effects of memory and inertia. However, recent
experiments have found inertial delay to be important for the motion of self-propelled …

Generalized Langevin equations for systems with local interactions

Y Zhu, D Venturi - Journal of Statistical Physics, 2020 - Springer
We present a new method to approximate the Mori–Zwanzig (MZ) memory integral in
generalized Langevin equations describing the evolution of smooth observables in high …

Quantum information with quantum-like bits

G Amati, GD Scholes - arXiv preprint arXiv:2408.06485, 2024 - arxiv.org
In previous work we have proposed a construction of quantum-like bits that could endow a
large, complex classical system, for example of oscillators, with quantum-like function that is …

Analysis of the Dynamics in Linear Chain Models by means of Generalized Langevin Equations

F Koch, S Mandal, T Schilling - Journal of Statistical Physics, 2024 - Springer
We analyse the motion of one particle in a polymer chain. For this purpose, we use the
framework of the exact (non-stationary) generalized Langevin equation that can be derived …

Base pairs opening and bubble transport in damped DNA dynamics with transport memory effects

JB Okaly, FII Ndzana, RL Woulaché, CB Tabi… - … Journal of Nonlinear …, 2019 - pubs.aip.org
Transport memory effects on nonlinear wave propagation are addressed in a damped
Peyrard-Bishop-Dauxois model of DNA dynamics. Under the continuum and overdamped …

Rare rogue fluctuations could be generic to strongly nonlinear and non-integrable systems

R Kashyap, S Sen - Mechanics Research Communications, 2023 - Elsevier
We explore the possible existence of sufficiently large energy or rogue fluctuations (RFs) at
late times in the strongly nonlinear regime of the classic β Fermi–Pasta–Ulam–Tsingou …