Sensitivity of transcription factors to DNA methylation

É Héberlé, AF Bardet - Essays in biochemistry, 2019 - portlandpress.com
Dynamic binding of transcription factors (TFs) to regulatory elements controls transcriptional
states throughout organism development. Epigenetics modifications, such as DNA …

[HTML][HTML] DNA methylation in epidermal differentiation, aging, and cancer

F Köhler, M Rodríguez-Paredes - Journal of Investigative Dermatology, 2020 - Elsevier
The formation and maintenance of the epidermis depend on epidermal stem cell
differentiation and must be tightly regulated. Epigenetic mechanisms such as DNA …

MK-FSVM-SVDD: a multiple kernel-based fuzzy SVM model for predicting DNA-binding proteins via support vector data description

Y Zou, H Wu, X Guo, L Peng, Y Ding… - Current …, 2021 - ingentaconnect.com
Background: Detecting DNA-binding proteins (DBPs) based on biological and chemical
methods is time-consuming and expensive. Objective: In recent years, the rise of …

[HTML][HTML] Computational identification of N6-methyladenosine sites in multiple tissues of mammals

FY Dao, H Lv, YH Yang, H Zulfiqar, H Gao… - Computational and …, 2020 - Elsevier
Abstract N6-methyladenosine (m6A) is the methylation of the adenosine at the nitrogen-6
position, which is the most abundant RNA methylation modification and involves a series of …

A method for identifying vesicle transport proteins based on LibSVM and MRMD

Z Tao, Y Li, Z Teng, Y Zhao - Computational and Mathematical …, 2020 - Wiley Online Library
With the development of computer technology, many machine learning algorithms have
been applied to the field of biology, forming the discipline of bioinformatics. Protein function …

[HTML][HTML] Identification of cyclin protein using gradient boost decision tree algorithm

H Zulfiqar, SS Yuan, QL Huang, ZJ Sun, FY Dao… - Computational and …, 2021 - Elsevier
Cyclin proteins are capable to regulate the cell cycle by forming a complex with cyclin-
dependent kinases to activate cell cycle. Correct recognition of cyclin proteins could provide …

Identifying antioxidant proteins by using amino acid composition and protein-protein interactions

Y Zhai, Y Chen, Z Teng, Y Zhao - Frontiers in Cell and Developmental …, 2020 - frontiersin.org
Excessive oxidative stress responses can threaten our health, and thus it is essential to
produce antioxidant proteins to regulate the body's oxidative responses. The low number of …

[HTML][HTML] Prediction of antioxidant proteins using hybrid feature representation method and random forest

C Ao, W Zhou, L Gao, B Dong, L Yu - Genomics, 2020 - Elsevier
Natural antioxidant proteins are mainly found in plants and animals, which interact to
eliminate excessive free radicals and protect cells and DNA from damage, prevent and treat …

RFhy-m2G: identification of RNA N2-methylguanosine modification sites based on random forest and hybrid features

C Ao, Q Zou, L Yu - Methods, 2022 - Elsevier
N2-methylguanosine is a post-transcriptional modification of RNA that is found in eukaryotes
and archaea. The biological function of m2G modification discovered so far is to control and …

DNA methylation processes in atherosclerotic plaque

E Aavik, M Babu, S Ylä-Herttuala - Atherosclerosis, 2019 - Elsevier
Underlying mechanisms of cardiovascular diseases (CVD) have been investigated for over
100 years and novel molecular level mechanisms in the pathophysiology are still …