Bioinformatics and biomedical informatics with ChatGPT: Year one review

J Wang, Z Cheng, Q Yao, L Liu, D Xu… - Quantitative Biology, 2024 - Wiley Online Library
The year 2023 marked a significant surge in the exploration of applying large language
model chatbots, notably Chat Generative Pre‐trained Transformer (ChatGPT), across …

Scientific language modeling: A quantitative review of large language models in molecular science

P Liu, J Tao, Z Ren - arXiv preprint arXiv:2402.04119, 2024 - arxiv.org
Efficient molecular modeling and design are crucial for the discovery and exploration of
novel molecules, and the incorporation of deep learning methods has revolutionized this …

Scientific large language models: A survey on biological & chemical domains

Q Zhang, K Ding, T Lyv, X Wang, Q Yin… - arXiv preprint arXiv …, 2024 - arxiv.org
Large Language Models (LLMs) have emerged as a transformative power in enhancing
natural language comprehension, representing a significant stride toward artificial general …

Drugassist: A large language model for molecule optimization

G Ye, X Cai, H Lai, X Wang, J Huang, L Wang… - arXiv preprint arXiv …, 2023 - arxiv.org
Recently, the impressive performance of large language models (LLMs) on a wide range of
tasks has attracted an increasing number of attempts to apply LLMs in drug discovery …

Moltailor: Tailoring chemical molecular representation to specific tasks via text prompts

H Guo, S Zhao, H Wang, Y Du, B Qin - Proceedings of the AAAI …, 2024 - ojs.aaai.org
Deep learning has become ubiquitous in drug discovery, providing significant acceleration
and cost reduction. As the most fundamental building block, molecular representation is …

Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey

Q Pei, L Wu, K Gao, J Zhu, Y Wang, Z Wang… - arXiv preprint arXiv …, 2024 - arxiv.org
The integration of biomolecular modeling with natural language (BL) has emerged as a
promising interdisciplinary area at the intersection of artificial intelligence, chemistry and …

ChatCell: Facilitating Single-Cell Analysis with Natural Language

Y Fang, K Liu, N Zhang, X Deng, P Yang… - arXiv preprint arXiv …, 2024 - arxiv.org
As Large Language Models (LLMs) rapidly evolve, their influence in science is becoming
increasingly prominent. The emerging capabilities of LLMs in task generalization and free …

Knowledge-informed molecular learning: A survey on paradigm transfer

Y Fang, Z Chen, X Fan, N Zhang, H Chen - International Conference on …, 2024 - Springer
Abstract Machine learning, notably deep learning, has significantly propelled molecular
investigations within the biochemical sphere. Traditionally, modeling for such research has …

Learning Multi-view Molecular Representations with Structured and Unstructured Knowledge

Y Luo, K Yang, M Hong, XY Liu, Z Nie, H Zhou… - arXiv preprint arXiv …, 2024 - arxiv.org
Capturing molecular knowledge with representation learning approaches holds significant
potential in vast scientific fields such as chemistry and life science. An effective and …

: Building a Dataset for Language + Molecules @ ACL 2024

C Edwards, Q Wang, L Zhao, H Ji - arXiv preprint arXiv:2403.00791, 2024 - arxiv.org
Language-molecule models have emerged as an exciting direction for molecular discovery
and understanding. However, training these models is challenging due to the scarcity of …