A Tutorial on Coding Methods for DNA-Based Molecular Communications and Storage

L Xiang, Q Liu, S Chen, K Yan, W Wu… - IEEE Internet of Things …, 2023 - ieeexplore.ieee.org
Exponential increase of data has motivated advances of data storage technologies. As a
promising storage media, DeoxyriboNucleic Acid (DNA) storage provides a much higher …

Design of constraint coding sets for archive DNA storage

Q Yin, Y Zheng, B Wang… - IEEE/ACM Transactions on …, 2021 - ieeexplore.ieee.org
With the advent of the era of massive data, the increase of storage demand has far
exceeded current storage capacity. DNA molecules provide a reliable solution for big data …

[HTML][HTML] An intelligent optimization algorithm for constructing a DNA storage code: NOL-HHO

Q Yin, B Cao, X Li, B Wang, Q Zhang, X Wei - International journal of …, 2020 - mdpi.com
The high density, large capacity, and long-term stability of DNA molecules make them an
emerging storage medium that is especially suitable for the long-term storage of large …

[HTML][HTML] Evolutionary approach to construct robust codes for DNA-based data storage

A Rasool, Q Jiang, Y Wang, X Huang, Q Qu… - Frontiers in …, 2023 - frontiersin.org
DNA is a practical storage medium with high density, durability, and capacity to
accommodate exponentially growing data volumes. A DNA sequence structure is a …

[HTML][HTML] Study of the error correction capability of multiple sequence alignment algorithm (MAFFT) in DNA storage

R Xie, X Zan, L Chu, Y Su, P Xu, W Liu - BMC bioinformatics, 2023 - Springer
Synchronization (insertions–deletions) errors are still a major challenge for reliable
information retrieval in DNA storage. Unlike traditional error correction codes (ECC) that add …

A hierarchical error correction strategy for text DNA storage

X Zan, X Yao, P Xu, Z Chen, L Xie, S Li… - Interdisciplinary Sciences …, 2022 - Springer
DNA storage has been a thriving interdisciplinary research area because of its high density,
low maintenance cost, and long durability for information storage. However, the complexity …

Iterative coding scheme satisfying gc balance and run-length constraints for dna storage with robustness to error propagation

SJ Park, Y Lee, JS No - Journal of Communications and …, 2022 - ieeexplore.ieee.org
In this paper, we propose a novel iterative encoding algorithm for DNA storage to satisfy
both the GC balance and run-length constraints using a greedy algorithm. DNA strands with …

Survey for a Decade of Coding for DNA Storage

O Sabary, HM Kiah, PH Siegel… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
Advancements in DNA synthesis and sequencing technologies have enabled the storage of
data on synthetic DNA strands. However, realizing its potential relies on the design of …

[PDF][PDF] Construction of GC-balanced DNA with deletion/insertion/mutation error correction for DNA storage system

T Xue, FCM Lau - Ieee Access, 2020 - scholar.archive.org
Synthetic deoxyribonucleic acid (DNA) is a good medium for storing digital data for a long
period due to its achievable high data storage density and outstanding longevity. However …

Channel model and decoder with memory for DNA data storage with nanopore sequencing

B Hamoum, E Dupraz - IEEE Access, 2023 - ieeexplore.ieee.org
This paper investigates channel coding for DNA data storage, a recent and emerging
paradigm in which both substitution errors and synchronization errors (insertions, deletions) …