[HTML][HTML] Genome engineering via gene editing technologies in microalgae

B Jeong, J Jang, ES Jin - Bioresource Technology, 2023 - Elsevier
CRISPR-Cas has revolutionized genetic modification with its comparative simplicity and
accuracy, and it can be used even at the genomic level. Microalgae are excellent feedstocks …

Minimal out-of-equilibrium metabolism for synthetic cells: a membrane perspective

E Bailoni, M Partipilo, J Coenradij… - ACS Synthetic …, 2023 - ACS Publications
Life-like systems need to maintain a basal metabolism, which includes importing a variety of
building blocks required for macromolecule synthesis, exporting dead-end products, and …

[HTML][HTML] Fundamental behaviors emerge from simulations of a living minimal cell

ZR Thornburg, DM Bianchi, TA Brier, BR Gilbert… - Cell, 2022 - cell.com
We present a whole-cell fully dynamical kinetic model (WCM) of JCVI-syn3A, a minimal cell
with a reduced genome of 493 genes that has retained few regulatory proteins or small …

Molecular dynamics simulation of an entire cell

JA Stevens, F Grünewald, PAM van Tilburg… - Frontiers in …, 2023 - frontiersin.org
The ultimate microscope, directed at a cell, would reveal the dynamics of all the cell's
components with atomic resolution. In contrast to their real-world counterparts …

Genetic requirements for cell division in a genomically minimal cell

JF Pelletier, L Sun, KS Wise, N Assad-Garcia, BJ Karas… - Cell, 2021 - cell.com
Genomically minimal cells, such as JCVI-syn3. 0, offer a platform to clarify genes underlying
core physiological processes. Although this minimal cell includes genes essential for …

A tuneable minimal cell membrane reveals that two lipid species suffice for life

I Justice, P Kiesel, N Safronova, A von Appen… - Nature …, 2024 - nature.com
All cells are encapsulated by a lipid membrane that facilitates their interactions with the
environment. How cells manage diverse mixtures of lipids, which dictate membrane property …

Principles of synthetic biology

KL Garner - Essays in biochemistry, 2021 - portlandpress.com
In synthetic biology, biological cells and processes are dismantled and reassembled to
make novel systems that do useful things. Designs are encoded by deoxyribonucleic acid …

Evolution of a minimal cell

RZ Moger-Reischer, JI Glass, KS Wise, L Sun… - Nature, 2023 - nature.com
Possessing only essential genes, a minimal cell can reveal mechanisms and processes that
are critical for the persistence and stability of life,. Here we report on how an engineered …

Understudied proteins and understudied functions in the model bacterium Bacillus subtilis—A major challenge in current research

D Wicke, J Meißner, R Warneke… - Molecular …, 2023 - Wiley Online Library
Abstract Model organisms such as the Gram‐positive bacterium Bacillus subtilis have been
studied intensively for decades. However, even for model organisms, no function has been …

A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century

E Bremer, A Calteau, A Danchin… - Microbial …, 2023 - Wiley Online Library
The vast majority of genomic sequences are automatically annotated using various software
programs. The accuracy of these annotations depends heavily on the very few manual …