[HTML][HTML] From bench to bedside: Single-cell analysis for cancer immunotherapy

EF Davis-Marcisak, A Deshpande, GL Stein-O'Brien… - Cancer cell, 2021 - cell.com
Single-cell technologies are emerging as powerful tools for cancer research. These
technologies characterize the molecular state of each cell within a tumor, enabling new …

[HTML][HTML] Single-cell biological network inference using a heterogeneous graph transformer

A Ma, X Wang, J Li, C Wang, T Xiao, Y Liu… - Nature …, 2023 - nature.com
Single-cell multi-omics (scMulti-omics) allows the quantification of multiple modalities
simultaneously to capture the intricacy of complex molecular mechanisms and cellular …

Intricacies of single-cell multi-omics data integration

P Rautenstrauch, AHC Vlot, S Saran, U Ohler - Trends in Genetics, 2022 - cell.com
A wealth of single-cell protocols makes it possible to characterize different molecular layers
at unprecedented resolution. Integrating the resulting multimodal single-cell data to find cell …

Single-cell RNA analysis reveals the potential risk of organ-specific cell types vulnerable to SARS-CoV-2 infections

Z Zhang, F Cui, C Cao, Q Wang, Q Zou - Computers in biology and …, 2022 - Elsevier
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a global
pandemic of coronavirus disease 2019 (COVID-19) since December 2019 that has led to …

[HTML][HTML] scREAD: a single-cell RNA-Seq database for Alzheimer's disease

J Jiang, C Wang, R Qi, H Fu, Q Ma - Iscience, 2020 - cell.com
Alzheimer's disease (AD) is a progressive neurodegenerative disorder of the brain and the
most common form of dementia among the elderly. The single-cell RNA-sequencing (scRNA …

[HTML][HTML] The use of single-cell multi-omics in immuno-oncology

A Ma, G Xin, Q Ma - Nature Communications, 2022 - nature.com
Single-cell multi-omics (scMulti-omics) has brought transformative insights into immuno-
oncology, demonstrating success in describing novel immune subsets and defining …

[HTML][HTML] DNA sequencing: an overview of solid-state and biological nanopore-based methods

MM Mohammadi, O Bavi - Biophysical reviews, 2022 - Springer
The field of sequencing is a topic of significant interest since its emergence and has become
increasingly important over time. Impressive achievements have been obtained in this field …

[HTML][HTML] Analyzing modern biomolecules: the revolution of nucleic-acid sequencing–Review

G Dorado, S Gálvez, TE Rosales, VF Vásquez… - Biomolecules, 2021 - mdpi.com
Recent developments have revolutionized the study of biomolecules. Among them are
molecular markers, amplification and sequencing of nucleic acids. The latter is classified into …

Network biology bridges the gaps between quantitative genetics and multi-omics to map complex diseases

S Wu, D Chen, MP Snyder - Current Opinion in Chemical Biology, 2022 - Elsevier
With advances in high-throughput sequencing technologies, quantitative genetics
approaches have provided insights into genetic basis of many complex diseases. Emerging …

[HTML][HTML] Integration and gene co-expression network analysis of scRNA-seq transcriptomes reveal heterogeneity and key functional genes in human spermatogenesis

N Salehi, MH Karimi-Jafari, M Totonchi… - Scientific Reports, 2021 - nature.com
Spermatogenesis is a complex process of cellular division and differentiation that begins
with spermatogonia stem cells and leads to functional spermatozoa production. However …