Genetic diversity and evolution of hepatitis C virus–15 years on

P Simmonds - Journal of General Virology, 2004 - microbiologyresearch.org
In the 15 years since the discovery of hepatitis C virus (HCV), much has been learned about
its role as a major causative agent of human liver disease and its ability to persist in the face …

Evasion of intracellular host defence by hepatitis C virus

M Gale Jr, EM Foy - Nature, 2005 - nature.com
Viral infection of mammalian cells rapidly triggers intracellular signalling events leading to
interferon α/β production and a cellular antiviral state. This 'host response'is our first line of …

Comprehensive in vivo secondary structure of the SARS-CoV-2 genome reveals novel regulatory motifs and mechanisms

NC Huston, H Wan, MS Strine, RCA Tavares, CB Wilen… - Molecular cell, 2021 - cell.com
Summary Severe-acute-respiratory-syndrome-related coronavirus 2 (SARS-CoV-2) is the
positive-sense RNA virus that causes coronavirus disease 2019 (COVID-19). The genome …

Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection

MD Smith, JO Wertheim, S Weaver… - Molecular biology …, 2015 - academic.oup.com
Over the past two decades, comparative sequence analysis using codon-substitution
models has been honed into a powerful and popular approach for detecting signatures of …

Regulating intracellular antiviral defense and permissiveness to hepatitis C virus RNA replication through a cellular RNA helicase, RIG-I

R Sumpter Jr, YM Loo, E Foy, K Li… - Journal of …, 2005 - Am Soc Microbiol
Virus-responsive signaling pathways that induce alpha/beta interferon production and
engage intracellular immune defenses influence the outcome of many viral infections. The …

The West Nile virus genome harbors essential riboregulatory elements with conserved and host-specific functional roles

NC Huston, LH Tsao, DE Brackney, AM Pyle - Proceedings of the National …, 2024 - pnas.org
West Nile virus (WNV) is an arthropod-borne, positive-sense RNA virus that poses an
increasing global threat due to warming climates and lack of effective therapeutics. Like …

Kissing-loop interaction in the 3′ end of the hepatitis C virus genome essential for RNA replication

P Friebe, J Boudet, JP Simorre… - Journal of …, 2005 - Am Soc Microbiol
The hepatitis C virus (HCV) is a positive-strand RNA virus belonging to the Flaviviridae. Its
genome carries at either end highly conserved nontranslated regions (NTRs) containing cis …

Novel insights into hepatitis C virus replication and persistence

R Bartenschlager, M Frese… - Advances in virus …, 2004 - books.google.com
C. Proteolytic Processing of Structural Proteins D. Proteolytic Processing of Nonstructural
Proteins E. Cis-Acting RNA Sequences Required for Replication F. Mechanism of RNA …

The p7 polypeptide of hepatitis C virus is critical for infectivity and contains functionally important genotype-specific sequences

A Sakai, MS Claire, K Faulk… - Proceedings of the …, 2003 - National Acad Sciences
The role of the hepatitis C virus (HCV) p7 protein in the virus life cycle is not known. Previous
in vitro data indicated that this 63-aa polypeptide is located in the endoplasmic reticulum …

The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and …

NJ Atkinson, J Witteveldt, DJ Evans… - Nucleic acids …, 2014 - academic.oup.com
Most RNA viruses infecting mammals and other vertebrates show profound suppression of
CpG and UpA dinucleotide frequencies. To investigate this functionally, mutants of the …