Structure, function and evolution of CpG island promoters

F Antequera - Cellular and Molecular Life Sciences CMLS, 2003 - Springer
Mammalian promoters belong to two different categories in terms of base composition and
DNA methylation. In humans and mice, approximately 60% of all promoters colocalize with …

Isochores and the evolutionary genomics of vertebrates

G Bernardi - Gene, 2000 - Elsevier
The nuclear genomes of vertebrates are mosaics of isochores, very long stretches (≫
300kb) of DNA that are homogeneous in base composition and are compositionally …

Widespread and tissue specific age-related DNA methylation changes in mice

S Maegawa, G Hinkal, HS Kim, L Shen… - Genome …, 2010 - genome.cshlp.org
Aberrant methylation of promoter CpG islands in cancer is associated with silencing of tumor-
suppressor genes, and age-dependent hypermethylation in normal appearing mucosa may …

CpG islands and genes

SH Cross, AP Bird - Current opinion in genetics & development, 1995 - Elsevier
Of the estimated 45 000 CpG islands in the human genome, the overwhelming majority are
found at the 5′ ends of genes and their identification and cloning are proving very useful for …

Gene number, noise reduction and biological complexity

AP Bird - Trends in Genetics, 1995 - cell.com
Preliminary estimates suggest that gene number, and hence biological complexity,
increased suddenly at two periods of macroevolutionary change (the origin of eukaryotes …

Of men and mice: modeling the fragile X syndrome

R Dahlhaus - Frontiers in molecular neuroscience, 2018 - frontiersin.org
The Fragile X Syndrome (FXS) is one of the most common forms of inherited intellectual
disability in all human societies. Caused by the transcriptional silencing of a single gene, the …

The human genome: organization and evolutionary history

G Bernardi - Annual review of genetics, 1995 - go.gale.com
The term genome was first introduced by German botanist Hans Winkler in the early 19th
century to describe the eukaryotic chromosome. It gained considerable attention through the …

Comparative genomics

W Miller, KD Makova, A Nekrutenko… - Annu. Rev. Genomics …, 2004 - annualreviews.org
▪ Abstract The genomes from three mammals (human, mouse, and rat), two worms, and
several yeasts have been sequenced, and more genomes will be completed in the near …

CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences

L Ponger, D Mouchiroud - Bioinformatics, 2002 - academic.oup.com
Results: CpGProD is an application for identifying mammalian promoter regions associated
with CpG islands in large genomic sequences. Although it is strictly dedicated to this …

Genome-Wide miRNA Expression Profiling Identifies miR-9-3 and miR-193a as Targets for DNA Methylation in Non–Small Cell Lung Cancers

G Heller, M Weinzierl, C Noll, V Babinsky, B Ziegler… - Clinical cancer …, 2012 - AACR
Purpose: The major aim of this study was to investigate the role of DNA methylation (referred
to as methylation) on miRNA silencing in non–small cell lung cancers (NSCLC) …