Large-scale crystallization of proteins for purification and formulation

D Hekmat - Bioprocess and biosystems engineering, 2015 - Springer
Since about 170 years, salts were used to create supersaturated solutions and crystallize
proteins. The dehydrating effect of salts as well as their kosmotropic or chaotropic character …

An overview of recent advances in structural bioinformatics of protein–protein interactions and a guide to their principles

G Sudha, R Nussinov, N Srinivasan - Progress in biophysics and molecular …, 2014 - Elsevier
Rich data bearing on the structural and evolutionary principles of protein–protein
interactions are paving the way to a better understanding of the regulation of function in the …

PPI-hotspotID: A Method for Detecting Protein-Protein Interaction Hot Spots from the Free Protein Structure

YC Chen, K Sargsyan, JD Wright, YH Chen, YS Huang… - eLife, 2024 - elifesciences.org
Experimental detection of residues critical for protein-protein interactions (PPI) is a
timeconsuming, costly, and labor-intensive process. Hence, high-throughput PPI-hot spot …

Rational design of therapeutic mAbs against aggregation through protein engineering and incorporation of glycosylation motifs applied to bevacizumab

F Courtois, NJ Agrawal, TM Lauer, BL Trout - MAbs, 2016 - Taylor & Francis
The aggregation of biotherapeutics is a major hindrance to the development of successful
drug candidates; however, the propensity to aggregate is often identified too late in the …

Developability assessment of engineered monoclonal antibody variants with a complex self-association behavior using complementary analytical and in silico tools

L Shan, N Mody, P Sormani, KL Rosenthal… - Molecular …, 2018 - ACS Publications
Monoclonal antibodies (mAbs) are complex molecular structures. They are often prone to
development challenges particularly at high concentrations due to undesired solution …

Protein–protein interaction and non-interaction predictions using gene sequence natural vector

N Zhao, M Zhuo, K Tian, X Gong - Communications Biology, 2022 - nature.com
Predicting protein–protein interaction and non-interaction are two important different aspects
of multi-body structure predictions, which provide vital information about protein function …

PPI-HotspotDB: Database of Protein–Protein Interaction Hot Spots

YC Chen, YH Chen, JD Wright… - Journal of Chemical …, 2022 - ACS Publications
Single-point mutations of certain residues (so-called hot spots) impair/disrupt protein–
protein interactions (PPIs), leading to pathogenesis and drug resistance. Conventionally, a …

BOW-GBDT: a GBDT classifier combining with artificial neural network for identifying GPCR–drug interaction based on wordbook learning from sequences

W Qiu, Z Lv, Y Hong, J Jia, X Xiao - Frontiers in Cell and …, 2021 - frontiersin.org
Background: As a class of membrane protein receptors, G protein-coupled receptors
(GPCRs) are very important for cells to complete normal life function and have been proven …

Methods for discovering and targeting druggable protein-protein interfaces and their application to repurposing

ES Ozdemir, F Halakou, R Nussinov, A Gursoy… - … Methods for Drug …, 2019 - Springer
Drug repurposing is a creative and resourceful approach to increase the number of
therapies by exploiting available and approved drugs. However, identifying new protein …

Prediction of protein–protein interaction sites with machine-learning-based data-cleaning and post-filtering procedures

GH Liu, HB Shen, DJ Yu - The Journal of membrane biology, 2016 - Springer
Accurately predicting protein–protein interaction sites (PPIs) is currently a hot topic because
it has been demonstrated to be very useful for understanding disease mechanisms and …