In vivo imaging of neural activity

W Yang, R Yuste - Nature methods, 2017 - nature.com
Since the introduction of calcium imaging to monitor neuronal activity with single-cell
resolution, optical imaging methods have revolutionized neuroscience by enabling …

Neural coding with bursts—current state and future perspectives

F Zeldenrust, WJ Wadman, B Englitz - Frontiers in computational …, 2018 - frontiersin.org
Neuronal action potentials or spikes provide a long-range, noise-resistant means of
communication between neurons. As point processes single spikes contain little information …

CaImAn an open source tool for scalable calcium imaging data analysis

A Giovannucci, J Friedrich, P Gunn, J Kalfon, BL Brown… - elife, 2019 - elifesciences.org
Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer
time resolution. The resulting data rates require reproducible analysis pipelines that are …

Suite2p: beyond 10,000 neurons with standard two-photon microscopy

M Pachitariu, C Stringer, S Schröder, M Dipoppa… - BioRxiv, 2016 - biorxiv.org
The combination of two-photon microscopy recordings and powerful calcium-dependent
fluorescent sensors enables simultaneous recording of unprecedentedly large populations …

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data

P Zhou, SL Resendez, J Rodriguez-Romaguera… - elife, 2018 - elifesciences.org
In vivo calcium imaging through microendoscopic lenses enables imaging of previously
inaccessible neuronal populations deep within the brains of freely moving animals …

Glioma epileptiform activity and progression are driven by IGSF3-mediated potassium dysregulation

RN Curry, I Aiba, J Meyer, B Lozzi, Y Ko, MF McDonald… - Neuron, 2023 - cell.com
Seizures are a frequent pathophysiological feature of malignant glioma. Recent studies
implicate peritumoral synaptic dysregulation as a driver of brain hyperactivity and tumor …

Single-neuron perturbations reveal feature-specific competition in V1

SN Chettih, CD Harvey - Nature, 2019 - nature.com
The computations performed by local neural populations, such as a cortical layer, are
typically inferred from anatomical connectivity and observations of neural activity. Here we …

Fast and robust active neuron segmentation in two-photon calcium imaging using spatiotemporal deep learning

S Soltanian-Zadeh, K Sahingur… - Proceedings of the …, 2019 - National Acad Sciences
Calcium imaging records large-scale neuronal activity with cellular resolution in vivo.
Automated, fast, and reliable active neuron segmentation is a critical step in the analysis …

[HTML][HTML] From brain science to artificial intelligence

J Fan, L Fang, J Wu, Y Guo, Q Dai - Engineering, 2020 - Elsevier
Reviewing the history of the development of artificial intelligence (AI) clearly reveals that
brain science has resulted in breakthroughs in AI, such as deep learning. At present …

[HTML][HTML] Analysis pipelines for calcium imaging data

EA Pnevmatikakis - Current opinion in neurobiology, 2019 - Elsevier
Calcium imaging is a popular tool among neuroscientists because of its capability to monitor
in vivo large neural populations across weeks with single neuron and single spike …