Upstream open reading frames differentially regulate gene-specific translation in the integrated stress response

SK Young, RC Wek - Journal of Biological Chemistry, 2016 - ASBMB
Translation regulation largely occurs during initiation, which features ribosome assembly
onto mRNAs and selection of the translation start site. Short, upstream ORFs (uORFs) …

Nutrient sensing and TOR signaling in yeast and mammals

A González, MN Hall - The EMBO journal, 2017 - embopress.org
Coordinating cell growth with nutrient availability is critical for cell survival. The evolutionarily
conserved TOR (target of rapamycin) controls cell growth in response to nutrients, in …

The molecular biology of fruity and floral aromas in beer and other alcoholic beverages

S Holt, MH Miks, BT de Carvalho… - FEMS microbiology …, 2019 - academic.oup.com
Aroma compounds provide attractiveness and variety to alcoholic beverages. We discuss
the molecular biology of a major subset of beer aroma volatiles, fruity and floral compounds …

Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae

M Conrad, J Schothorst, HN Kankipati… - FEMS microbiology …, 2014 - academic.oup.com
The yeast Saccharomyces cerevisiae has been a favorite organism for pioneering studies
on nutrient-sensing and signaling mechanisms. Many specific nutrient responses have been …

Effects of abiotic stress on plants: a systems biology perspective

GR Cramer, K Urano, S Delrot, M Pezzotti… - BMC plant biology, 2011 - Springer
The natural environment for plants is composed of a complex set of abiotic stresses and
biotic stresses. Plant responses to these stresses are equally complex. Systems biology …

Regulation of Amino Acid, Nucleotide, and Phosphate Metabolism in Saccharomyces cerevisiae

PO Ljungdahl, B Daignan-Fornier - Genetics, 2012 - academic.oup.com
Ever since the beginning of biochemical analysis, yeast has been a pioneering model for
studying the regulation of eukaryotic metabolism. During the last three decades, the …

[HTML][HTML] Nutrient-sensing mechanisms across evolution

L Chantranupong, RL Wolfson, DM Sabatini - Cell, 2015 - cell.com
For organisms to coordinate their growth and development with nutrient availability, they
must be able to sense nutrient levels in their environment. Here, we review select nutrient …

IDO inhibits a tryptophan sufficiency signal that stimulates mTOR: A novel IDO effector pathway targeted by D-1-methyl-tryptophan

R Metz, S Rust, JB DuHadaway, MR Mautino… - …, 2012 - Taylor & Francis
Tryptophan catabolism by indoleamine 2, 3-dioxygenase (IDO) alters inflammation and
favors T-cell tolerance in cancer, but the underlying molecular mechanisms remain poorly …

[HTML][HTML] Keeping the eIF2 alpha kinase Gcn2 in check

BA Castilho, R Shanmugam, RC Silva… - … et Biophysica Acta (BBA …, 2014 - Elsevier
The protein kinase Gcn2 is present in virtually all eukaryotes and is of increasing interest
due to its involvement in a large array of crucial biological processes. Some of these are …

Global analysis of the yeast knockout phenome

G Turco, C Chang, RY Wang, G Kim, EH Stoops… - Science …, 2023 - science.org
Genome-wide phenotypic screens in the budding yeast Saccharomyces cerevisiae, enabled
by its knockout collection, have produced the largest, richest, and most systematic …