Single-cell transcriptomics of a human kidney allograft biopsy specimen defines a diverse inflammatory response

H Wu, AF Malone, EL Donnelly, Y Kirita… - Journal of the …, 2018 - journals.lww.com
Background Single-cell genomics techniques are revolutionizing our ability to characterize
complex tissues. By contrast, the techniques used to analyze renal biopsy specimens have …

Metabolic reprogramming of the intestinal microbiome with functional bile acid changes underlie the development of NAFLD

E Smirnova, MD Muthiah, N Narayan, MS Siddiqui… - Hepatology, 2022 - journals.lww.com
Autoimmune hepatitis (AIH) is a rare disease of unclear etiology characterized by loss of self‐
tolerance that can lead to liver injury, cirrhosis, and acute liver failure. First‐line treatment …

[PDF][PDF] Noninvasive biomarkers for the diagnosis and management of autoimmune hepatitis

C Harrington, S Krishnan, CL Mack, P Cravedi… - …, 2022 - Wiley Online Library
Autoimmune hepatitis (AIH) is a rare disease of unclear etiology characterized by loss of self‐
tolerance that can lead to liver injury, cirrhosis, and acute liver failure. First‐line treatment …

[HTML][HTML] The transcripts associated with organ allograft rejection

PF Halloran, JM Venner, KS Madill-Thomsen… - American Journal of …, 2018 - Elsevier
The molecular mechanisms operating in human organ transplant rejection are best inferred
from the mRNAs expressed in biopsies because the corresponding proteins often have low …

Molecular assessment of disease states in kidney transplant biopsy samples

PF Halloran, KS Famulski, J Reeve - Nature Reviews Nephrology, 2016 - nature.com
Progress in renal transplantation requires improved understanding and assessment of
rejection and injury. Study of the relationship between gene expression and clinical …

[HTML][HTML] Diagnosis of renal transplant rejection: Banff classification and beyond

HJ Jeong - Kidney research and clinical practice, 2020 - ncbi.nlm.nih.gov
Diagnosis of renal transplant rejection is dependent on interpretation of renal allograft
biopsies. The Banff Classification of Allograft Pathology, which was developed as a …

[HTML][HTML] The causes, significance and consequences of inflammatory fibrosis in kidney transplantation: the Banff i-IFTA lesion

BJ Nankivell, M Shingde, KL Keung, CLS Fung… - American journal of …, 2018 - Elsevier
Inflammation within areas of interstitial fibrosis and tubular atrophy (i-IFTA) is associated with
adverse outcomes in kidney transplantation. We evaluated i-IFTA in 429 indication-and …

[HTML][HTML] Development and clinical validity of a novel blood-based molecular biomarker for subclinical acute rejection following kidney transplant

JJ Friedewald, SM Kurian, RL Heilman… - American Journal of …, 2019 - Elsevier
Noninvasive biomarkers are needed to monitor stable patients after kidney transplant (KT),
because subclinical acute rejection (subAR), currently detectable only with surveillance …

Recent advances on biomarkers of early and late kidney graft dysfunction

M Quaglia, G Merlotti, G Guglielmetti… - International journal of …, 2020 - mdpi.com
New biomarkers of early and late graft dysfunction are needed in renal transplant to improve
management of complications and prolong graft survival. A wide range of potential …

Multiscale genetic architecture of donor-recipient differences reveals intronic LIMS1 mismatches associated with kidney transplant survival

Z Sun, Z Zhang, K Banu, IW Gibson… - The Journal of …, 2023 - Am Soc Clin Investig
Donor-recipient (DR) mismatches outside of human leukocyte antigens (HLAs) contribute to
kidney allograft loss, but the mechanisms remain unclear, specifically for intronic …