VIS Atlas: A Database of Virus Integration Sites in Human Genome from NGS Data to Explore Integration Patterns

Y Chen, Y Wang, P Zhou, H Huang, R Li… - Genomics …, 2023 - academic.oup.com
Integration of oncogenic DNA viruses into the human genome is a key step in most virus-
induced carcinogenesis. Here, we constructed a virus integration site (VIS) Atlas database …

ViR: a tool to solve intrasample variability in the prediction of viral integration sites using whole genome sequencing data

E Pischedda, C Crava, M Carlassara, S Zucca… - BMC …, 2021 - Springer
Background Several bioinformatics pipelines have been developed to detect sequences
from viruses that integrate into the human genome because of the health relevance of these …

ViR: a tool to account for intrasample variability in the detection of viral integrations

E Pischedda, C Crava, M Carlassara, L Gasmi… - BioRxiv, 2020 - biorxiv.org
Lateral gene transfer (LT) from viruses to eukaryotic cells is a well-recognized phenomenon.
Somatic integrations of viruses have been linked to persistent viral infection and genotoxic …