Quantitative genetics and genomics converge to accelerate forest tree breeding

D Grattapaglia, OB Silva-Junior, RT Resende… - Frontiers in plant …, 2018 - frontiersin.org
Forest tree breeding has been successful at delivering genetically improved material for
multiple traits based on recurrent cycles of selection, mating, and testing. However, long …

Genomic selection and its research progress in aquaculture breeding

H Song, T Dong, X Yan, W Wang, Z Tian… - Reviews in …, 2023 - Wiley Online Library
Since its introduction in 2001, genomic selection (GS) has progressed rapidly. As a research
and application hot topic, GS has led to a revolution in the field of animal and plant breeding …

A guide on deep learning for complex trait genomic prediction

M Pérez-Enciso, LM Zingaretti - Genes, 2019 - mdpi.com
Deep learning (DL) has emerged as a powerful tool to make accurate predictions from
complex data such as image, text, or video. However, its ability to predict phenotypic values …

Functional Annotation of Animal Genomes (FAANG): current achievements and roadmap

E Giuffra, CK Tuggle… - Annual review of animal …, 2019 - annualreviews.org
Functional annotation of genomes is a prerequisite for contemporary basic and applied
genomic research, yet farmed animal genomics is deficient in such annotation. To address …

[HTML][HTML] Use of multiple 'omics techniques to accelerate the breeding of abiotic stress tolerant crops

MC Derbyshire, J Batley, D Edwards - Current Plant Biology, 2022 - Elsevier
Crop production can be severely limited by adverse environmental conditions such as
drought, extreme heat, and frost. As climate change intensifies, weather patterns are …

Development and validation of the Axiom®Apple480K SNP genotyping array

L Bianco, A Cestaro, G Linsmith, H Muranty… - The Plant …, 2016 - Wiley Online Library
Cultivated apple (Malus× domestica Borkh.) is one of the most important fruit crops in
temperate regions, and has great economic and cultural value. The apple genome is highly …

Genome‐wide association and genomic selection in aquaculture

JM Yanez, A Barria, ME Lopez, T Moen… - Reviews in …, 2023 - Wiley Online Library
Recent advancements in genomic technologies have led to the discovery and application of
DNA‐markers [eg single nucleotide polymorphisms (SNPs)] for the genetic improvement of …

Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare

P Suravajhala, LJA Kogelman… - Genetics Selection …, 2016 - Springer
In the past years, there has been a remarkable development of high-throughput omics (HTO)
technologies such as genomics, epigenomics, transcriptomics, proteomics and …

Selecting sequence variants to improve genomic predictions for dairy cattle

PM VanRaden, ME Tooker, JR O'connell… - Genetics Selection …, 2017 - Springer
Background Millions of genetic variants have been identified by population-scale
sequencing projects, but subsets of these variants are needed for routine genomic …

How array design creates SNP ascertainment bias

J Geibel, C Reimer, S Weigend, A Weigend, T Pook… - PloS one, 2021 - journals.plos.org
Single nucleotide polymorphisms (SNPs), genotyped with arrays, have become a widely
used marker type in population genetic analyses over the last 10 years. However, compared …