RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

Antibiotics that target protein synthesis

LS McCoy, Y Xie, Y Tor - Wiley Interdisciplinary Reviews: RNA, 2011 - Wiley Online Library
The key role of the bacterial ribosome makes it an important target for antibacterial agents.
Indeed, a large number of clinically useful antibiotics target this complex translational …

DNA-binding drugs caught in action: the latest 3D pictures of drug-DNA complexes

DR Boer, A Canals, M Coll - Dalton Transactions, 2009 - pubs.rsc.org
In this paper, we review recent DNA-binding agents that are expected to influence the field
of DNA-targeting. We restrict ourselves to binders for which the three-dimensional structure …

Structure‐based DNA‐targeting strategies with small molecule ligands for drug discovery

J Sheng, J Gan, Z Huang - Medicinal research reviews, 2013 - Wiley Online Library
Nucleic acids are the molecular targets of many clinical anticancer drugs. However,
compared with proteins, nucleic acids have traditionally attracted much less attention as …

Comprehensive review of chemical strategies for the preparation of new aminoglycosides and their biological activities

NT Chandrika, S Garneau-Tsodikova - Chemical Society Reviews, 2018 - pubs.rsc.org
A systematic analysis of all synthetic and chemoenzymatic methodologies for the
preparation of aminoglycosides for a variety of applications (therapeutic and agricultural) …

Designer aminoglycosides: the race to develop improved antibiotics and compounds for the treatment of human genetic diseases

M Hainrichson, I Nudelman, T Baasov - Organic & biomolecular …, 2008 - pubs.rsc.org
Aminoglycosides are highly potent, broad-spectrum antibiotics that exert their bactericidal
therapeutic effect by selectively binding to the decoding aminoacyl site (A-site) of the …

Apralogs: Apramycin 5-O-Glycosides and Ethers with Improved Antibacterial Activity and Ribosomal Selectivity and Reduced Susceptibility to the …

JCK Quirke, P Rajasekaran, VA Sarpe… - Journal of the …, 2019 - ACS Publications
Apramycin is a structurally unique member of the 2-deoxystreptamine class of
aminoglycoside antibiotics characterized by a monosubstituted 2-deoxystreptamine ring that …

A molecular dynamics simulation study of an aminoglycoside/A-site RNA complex: conformational and hydration patterns

AC Vaiana, E Westhof, P Auffinger - Biochimie, 2006 - Elsevier
Aminoglycoside antibiotics interfere with the translation mechanism by binding to the tRNA
decoding site of the 16S ribosomal RNA. Crystallographic structures of aminoglycosides …

When proteins start to make sense: fine-tuning of aminoglycosides for PTC suppression therapy

M Shalev, T Baasov - Medchemcomm, 2014 - pubs.rsc.org
Aminoglycosides (AGs) are highly potent antibacterial agents, which are known to exert their
deleterious effects on bacterial cells by interfering with the translation process, leading to …

Pharmaceuticals targeting nonsense mutations in genetic diseases: progress in development

SM Rowe, JP Clancy - BioDrugs, 2009 - Springer
Premature termination codons (PTCs) are a cause of numerous genetic disorders spanning
diseases that affect children and adults, and are produced by base pair substitutions that …