Learning to classify species with barcodes

P Bertolazzi, G Felici, E Weitschek - BMC bioinformatics, 2009 - Springer
Background According to many field experts, specimens classification based on
morphological keys needs to be supported with automated techniques based on the …

Developing diagnostic SNP panels for the identification of true fruit flies (Diptera: Tephritidae) within the limits of COI-based species delimitation

JE Frey, L Guillén, B Frey, J Samietz, J Rull… - BMC Evolutionary …, 2013 - Springer
Background Rapid and reliable identification of quarantine pests is essential for plant
inspection services to prevent introduction of invasive species. For insects, this may be a …

Computational intelligence in bioinformatics: SNP/haplotype data in genetic association study for common diseases

A Kelemen, AV Vasilakos… - IEEE Transactions on …, 2009 - ieeexplore.ieee.org
Comprehensive evaluation of common genetic variations through association of single-
nucleotide polymorphism (SNP) structure with common complex disease in the genome …

[HTML][HTML] A hybrid Lagrangean heuristic with GRASP and path-relinking for set k-covering

LS Pessoa, MGC Resende, CC Ribeiro - Computers & Operations …, 2013 - Elsevier
The set multicovering or set k-covering problem is an extension of the classical set covering
problem, in which each object is required to be covered at least k times. The problem finds …

[PDF][PDF] A simple and effective methodology for generating bounded solutions for the set k-covering and set variable k-covering Problems: a guide for OR practitioners

B McNally, Y Lu, E Shively-Ertas… - Review of Computer …, 2021 - researchgate.net
Contribution/Originality: This study documents a methodology that iteratively uses integer
programming software to efficiently generate solutions that are guaranteed to be very close …

A novel local search algorithm with configuration checking and scoring mechanism for the set k‐covering problem

Y Wang, M Yin, D Ouyang… - … Transactions in Operational …, 2017 - Wiley Online Library
The set k‐covering problem, an extension of the classical set covering problem, is an
important NP‐hard combinatorial optimization problem with extensive applications …

Assessing effectiveness of many-objective evolutionary algorithms for selection of tag SNPs

R Moqa, I Younas, M Bashir - Plos one, 2022 - journals.plos.org
Background Studies on genome-wide associations help to determine the cause of many
genetic diseases. Genome-wide associations typically focus on associations between single …

A hybrid of max–min ant system and linear programming for the k-covering problem

S Al-Shihabi - Computers & Operations Research, 2016 - Elsevier
This paper presents a hybrid algorithm of linear programming (LP), max–min ant system,
and local search for solving large instances of the k-covering problem (SC k P). This …

Informative SNPs selection based on two-locus and multilocus linkage disequilibrium: criteria of max-correlation and min-redundancy

X Li, B Liao, L Cai, Z Cao, W Zhu - IEEE/ACM Transactions on …, 2013 - ieeexplore.ieee.org
Currently, there are lots of methods to select informative SNPs for haplotype reconstruction.
However, there are still some challenges that render them ineffective for large data sets …

[HTML][HTML] Multiple ant colony algorithm method for selecting tag SNPs

B Liao, X Li, W Zhu, R Li, S Wang - Journal of biomedical informatics, 2012 - Elsevier
The search for the association between complex disease and single nucleotide
polymorphisms (SNPs) or haplotypes has recently received great attention. Finding a set of …