Proteomic and interactomic insights into the molecular basis of cell functional diversity

I Bludau, R Aebersold - Nature Reviews Molecular Cell Biology, 2020 - nature.com
The ability of living systems to adapt to changing conditions originates from their capacity to
change their molecular constitution. This is achieved by multiple mechanisms that modulate …

Transient protein-protein interactions: structural, functional, and network properties

JR Perkins, I Diboun, BH Dessailly, JG Lees, C Orengo - Structure, 2010 - cell.com
Transient interactions, which involve protein interactions that are formed and broken easily,
are important in many aspects of cellular function. Here we describe structural and functional …

Transient protein–protein interactions

SE Acuner Ozbabacan, HB Engin… - … , Design & Selection, 2011 - academic.oup.com
Transient complexes are crucial for diverse biological processes such as biochemical
pathways and signaling cascades in the cell. Here, we give an overview of the transient …

[HTML][HTML] The ribosome as a hub for protein quality control

S Pechmann, F Willmund, J Frydman - Molecular cell, 2013 - cell.com
Cells face a constant challenge as they produce new proteins. The newly synthesized
polypeptides must be folded properly to avoid aggregation. If proteins do misfold, they must …

Intrinsically disordered proteins/regions and insight into their biomolecular interactions

P Chakrabarti, D Chakravarty - Biophysical Chemistry, 2022 - Elsevier
Proteins may vary from being rigid to having flexible regions to being completely disordered,
either as an intrinsically disordered protein (IDP) or having specific intrinsically disordered …

Literature-curated protein interaction datasets

ME Cusick, H Yu, A Smolyar, K Venkatesan… - Nature …, 2009 - nature.com
High-quality datasets are needed to understand how global and local properties of protein-
protein interaction, or'interactome', networks relate to biological mechanisms, and to guide …

A simple definition of structural regions in proteins and its use in analyzing interface evolution

ED Levy - Journal of molecular biology, 2010 - Elsevier
Analysis of proteins commonly requires the partition of their structure into regions such as
the surface, interior, or interface. Despite the frequent use of such categorization, no …

[HTML][HTML] The role of protein interaction networks in systems biomedicine

T Sevimoglu, KY Arga - Computational and structural biotechnology journal, 2014 - Elsevier
The challenging task of studying and modeling complex dynamics of biological systems in
order to describe various human diseases has gathered great interest in recent years. Major …

[HTML][HTML] The rules of disorder or why disorder rules

J Gsponer, MM Babu - Progress in biophysics and molecular biology, 2009 - Elsevier
The finding that a large fraction of proteins (over 30%) in eukaryotic cells lack a unique three-
dimensional structure but are functional has forced the scientific community to review its …

Identifying protein complexes and functional modules—from static PPI networks to dynamic PPI networks

B Chen, W Fan, J Liu, FX Wu - Briefings in bioinformatics, 2014 - academic.oup.com
Cellular processes are typically carried out by protein complexes and functional modules.
Identifying them plays an important role for our attempt to reveal principles of cellular …