Little fish, big data: zebrafish as a model for cardiovascular and metabolic disease

P Gut, S Reischauer, DYR Stainier… - Physiological …, 2017 - journals.physiology.org
The burden of cardiovascular and metabolic diseases worldwide is staggering. The
emergence of systems approaches in biology promises new therapies, faster and cheaper …

DNA transposons: nature and applications in genomics

M Muñoz-López, JL García-Pérez - Current genomics, 2010 - ingentaconnect.com
Repeated DNA makes up a large fraction of a typical mammalian genome, and some
repetitive elements are able to move within the genome (transposons and retrotransposons) …

Predictable and precise template-free CRISPR editing of pathogenic variants

MW Shen, M Arbab, JY Hsu, D Worstell, SJ Culbertson… - Nature, 2018 - nature.com
Following Cas9 cleavage, DNA repair without a donor template is generally considered
stochastic, heterogeneous and impractical beyond gene disruption. Here, we show that …

Continuous evolution of SpCas9 variants compatible with non-G PAMs

SM Miller, T Wang, PB Randolph, M Arbab… - Nature …, 2020 - nature.com
The targeting scope of Streptococcus pyogenes Cas9 (SpCas9) and its engineered variants
is largely restricted to protospacer-adjacent motif (PAM) sequences containing G bases …

mScarlet3: a brilliant and fast-maturing red fluorescent protein

TWJ Gadella Jr, L van Weeren, J Stouthamer… - Nature …, 2023 - nature.com
We report the evolution of mScarlet3, a cysteine-free monomeric red fluorescent protein with
fast and complete maturation, as well as record brightness, quantum yield (75%) and …

Determinants of base editing outcomes from target library analysis and machine learning

M Arbab, MW Shen, B Mok, C Wilson, Ż Matuszek… - Cell, 2020 - cell.com
Although base editors are widely used to install targeted point mutations, the factors that
determine base editing outcomes are not well understood. We characterized sequence …

An autophagic flux probe that releases an internal control

T Kaizuka, H Morishita, Y Hama, S Tsukamoto… - Molecular cell, 2016 - cell.com
Macroautophagy is an intracellular degradation system that utilizes the autophagosome to
deliver cytoplasmic components to the lysosome. Measuring autophagic activity is critically …

ERK-mediated mechanochemical waves direct collective cell polarization

N Hino, L Rossetti, A Marín-Llauradó, K Aoki, X Trepat… - Developmental cell, 2020 - cell.com
During collective migration of epithelial cells, the migration direction is aligned over a tissue-
scale expanse. Although the collective cell migration is known to be directed by mechanical …

Organelle degradation in the lens by PLAAT phospholipases

H Morishita, T Eguchi, S Tsukamoto, Y Sakamaki… - Nature, 2021 - nature.com
The eye lens of vertebrates is composed of fibre cells in which all membrane-bound
organelles undergo degradation during terminal differentiation to form an organelle-free …

Endothelial cells dynamically compete for the tip cell position during angiogenic sprouting

L Jakobsson, CA Franco, K Bentley, RT Collins… - Nature cell …, 2010 - nature.com
Sprouting angiogenesis requires the coordinated behaviour of endothelial cells, regulated
by Notch and vascular endothelial growth factor receptor (VEGFR) signalling. Here, we use …