DeepInsight-3D architecture for anti-cancer drug response prediction with deep-learning on multi-omics

A Sharma, A Lysenko, KA Boroevich, T Tsunoda - Scientific reports, 2023 - nature.com
Modern oncology offers a wide range of treatments and therefore choosing the best option
for particular patient is very important for optimal outcome. Multi-omics profiling in …

HybridDBRpred: improved sequence-based prediction of DNA-binding amino acids using annotations from structured complexes and disordered proteins

J Zhang, S Basu, L Kurgan - Nucleic Acids Research, 2024 - academic.oup.com
Current predictors of DNA-binding residues (DBRs) from protein sequences belong to two
distinct groups, those trained on binding annotations extracted from structured protein-DNA …

Enhanced analysis of tabular data through Multi-representation DeepInsight

A Sharma, Y López, S Jia, A Lysenko, KA Boroevich… - Scientific Reports, 2024 - nature.com
Tabular data analysis is a critical task in various domains, enabling us to uncover valuable
insights from structured datasets. While traditional machine learning methods can be used …

GMean—a semi-supervised GRU and K-mean model for predicting the TF binding site

CW Chuah, W He, DS Huang - Scientific Reports, 2024 - nature.com
The transcription factor binding site is a deoxyribonucleic acid sequence that binds to
transcription factors. Transcription factors are proteins that regulate the transcription gene …

Isolation, characterization and therapeutic evaluation of a new Acinetobacter virus Abgy202141 lysing Acinetobacter baumannii

X Tian, X Liu, J Zhou, L Wang, Q Wang, X Qi… - Frontiers in …, 2024 - frontiersin.org
Acinetobacter baumannii is an opportunistic pathogen that easily resists currently available
antibiotics. Phages are considered alternative therapeutic agents to conventional antibiotics …

Applications of different machine learning methods on nuclear charge radius estimations

T Bayram, CM Yeşilkanat, S Akkoyun - Physica Scripta, 2023 - iopscience.iop.org
Theoretical models come into play when the radius of nuclear charge, one of the most
fundamental properties of atomic nuclei, cannot be measured using different experimental …

Integrating reduced amino acid composition into PSSM for improving copper ion-binding protein prediction

S Liu, Y Liang, J Li, S Yang, M Liu, C Liu… - International Journal of …, 2023 - Elsevier
Copper ion-binding proteins play an essential role in metabolic processes and are critical
factors in many diseases, such as breast cancer, lung cancer, and Menkes disease. Many …

Deep-GAN: an improved model for thyroid nodule identification and classification

R Srivastava, P Kumar - Neural Computing and Applications, 2024 - Springer
Tailoring a deep convolutional neural network (DCNN) is a tedious and time-consuming task
in the field of medical image analysis. In this research paper, Deep-generative adversial …

[HTML][HTML] Accurately Identifying Sound vs. Rotten Cranberries Using Convolutional Neural Network

SM Azim, A Spadaro, J Kawash, J Polashock… - Information, 2024 - mdpi.com
Cranberries, native to North America, are known for their nutritional value and human health
benefits. One hurdle to commercial production is losses due to fruit rot. Cranberry fruit rot …

DWFL: Enhancing Federated Learning through Dynamic Weighted Averaging

P Chourasia, TE Ali, S Ali, M Pattersn - arXiv preprint arXiv:2411.05173, 2024 - arxiv.org
Federated Learning (FL) is a distributed learning technique that maintains data privacy by
providing a decentralized training method for machine learning models using distributed big …