Improving broad-coverage medical entity linking with semantic type prediction and large-scale datasets

S Vashishth, D Newman-Griffis, R Joshi, R Dutt… - Journal of biomedical …, 2021 - Elsevier
Objectives Biomedical natural language processing tools are increasingly being applied for
broad-coverage information extraction—extracting medical information of all types in a …

Deep contextualized biomedical abbreviation expansion

Q Jin, J Liu, X Lu - arXiv preprint arXiv:1906.03360, 2019 - arxiv.org
Automatic identification and expansion of ambiguous abbreviations are essential for
biomedical natural language processing applications, such as information retrieval and …

deepBioWSD: effective deep neural word sense disambiguation of biomedical text data

A Pesaranghader, S Matwin, M Sokolova… - Journal of the …, 2019 - academic.oup.com
Objective In biomedicine, there is a wealth of information hidden in unstructured narratives
such as research articles and clinical reports. To exploit these data properly, a word sense …

Biomedical word sense disambiguation based on graph attention networks

CX Zhang, ML Wang, XY Gao - IEEE Access, 2022 - ieeexplore.ieee.org
Biomedical words have many semantics. Biomedical word sense disambiguation (WSD) is
an important research issue in biomedicine field. Biomedical WSD refers to the process of …

Attention neural network for biomedical word sense disambiguation

CX Zhang, SY Pang, XY Gao, JQ Lu… - Discrete Dynamics in …, 2022 - Wiley Online Library
In order to improve the disambiguation accuracy of biomedical words, this paper proposes a
disambiguation method based on the attention neural network. The biomedical word is …

An Efficient Parallelized Ontology Network‐Based Semantic Similarity Measure for Big Biomedical Document Clustering

M Li, T Chen, KH Ryu, CH Jin - … and Mathematical Methods in …, 2021 - Wiley Online Library
Semantic mining is always a challenge for big biomedical text data. Ontology has been
widely proved and used to extract semantic information. However, the process of ontology …

Extraction of chemical–protein interactions from the literature using neural networks and narrow instance representation

R Antunes, S Matos - Database, 2019 - academic.oup.com
The scientific literature contains large amounts of information on genes, proteins, chemicals
and their interactions. Extraction and integration of this information in curated knowledge …

Extracting chemical–protein interactions using long short-term memory networks

S Matos - Proceedings of the BioCreative VI Workshop, 2017 - pdfs.semanticscholar.org
Extracting Chemical- Protein Interactions using Long Short-Term Memory Networks Page 1
Extracting ChemicalProtein Interactions using Long Short-Term Memory Networks Sérgio Matos …

[PDF][PDF] Automating text simplification using pictographs for people with language deficits

MF Imam, AE Aboutabl, EH Mohamed - IJ Information Technology …, 2019 - mecs-press.net
Automating text simplification is a challenging research area due to the compound structures
present in natural languages. Social involvement of people with language deficits can be …

Temporal disambiguation of relative temporal expressions in clinical texts

AL Olex, BT McInnes - Frontiers in Research Metrics and Analytics, 2022 - frontiersin.org
Temporal expression recognition and normalization (TERN) is the foundation for all higher-
level temporal reasoning tasks in natural language processing, such as timeline extraction …