Actinobacteriophages: genomics, dynamics, and applications

GF Hatfull - Annual review of virology, 2020 - annualreviews.org
Actinobacteriophages are viruses that infect bacterial hosts in the phylum Actinobacteria.
More than 17,000 actinobacteriophages have been described and over 3,000 complete …

Mycobacteriophages: from petri dish to patient

GF Hatfull - PLoS Pathogens, 2022 - journals.plos.org
Mycobacteriophages—bacteriophages infecting Mycobacterium hosts—contribute
substantially to our understanding of viral diversity and evolution, provide resources for …

Programmable transcriptional repression in mycobacteria using an orthogonal CRISPR interference platform

JM Rock, FF Hopkins, A Chavez, M Diallo… - Nature …, 2017 - nature.com
The development of new drug regimens that allow rapid, sterilizing treatment of tuberculosis
has been limited by the complexity and time required for genetic manipulations in …

Bacteriophage genomics

GF Hatfull - Current opinion in microbiology, 2008 - Elsevier
The past three years have seen an escalation in the number of sequenced bacteriophage
genomes with more than 500 now in the NCBI phage database, representing a more than …

Comparative genomic analysis of 60 mycobacteriophage genomes: genome clustering, gene acquisition, and gene size

GF Hatfull, D Jacobs-Sera, JG Lawrence… - Journal of molecular …, 2010 - Elsevier
Mycobacteriophages are viruses that infect mycobacterial hosts. Expansion of a collection of
sequenced phage genomes to a total of 60—all infecting a common bacterial host …

Directed in vitro evolution of therapeutic bacteriophages: The Appelmans protocol

BH Burrowes, IJ Molineux, JA Fralick - Viruses, 2019 - mdpi.com
The 'Appelmans protocol'is used by Eastern European researchers to generate therapeutic
phages with novel lytic host ranges. Phage cocktails are iteratively grown on a suite of …

BRED: a simple and powerful tool for constructing mutant and recombinant bacteriophage genomes

LJ Marinelli, M Piuri, Z Swigoňová, A Balachandran… - PLoS …, 2008 - journals.plos.org
Advances in DNA sequencing technology have facilitated the determination of hundreds of
complete genome sequences both for bacteria and their bacteriophages. Some of these …

Causes and consequences of bacteriophage diversification via genetic exchanges across lifestyles and bacterial taxa

JA Moura de Sousa, E Pfeifer… - Molecular biology …, 2021 - academic.oup.com
Bacteriophages (phages) evolve rapidly by acquiring genes from other phages. This results
in mosaic genomes. Here, we identify numerous genetic transfers between distantly related …

ORBIT: a new paradigm for genetic engineering of mycobacterial chromosomes

KC Murphy, SJ Nelson, S Nambi… - MBio, 2018 - Am Soc Microbiol
Two efficient recombination systems were combined to produce a versatile method for
chromosomal engineering that obviates the need to prepare double-stranded DNA (dsDNA) …

Mycobacteriophages

GF Hatfull - Microbiology spectrum, 2018 - Am Soc Microbiol
Mycobacteriophages are viruses that infect mycobacterial hosts. A large number of
mycobacteriophages have been isolated and genomically characterized, providing insights …