Intertwining roles of R-loops and G-quadruplexes in DNA repair, transcription and genome organization

P Wulfridge, K Sarma - Nature Cell Biology, 2024 - nature.com
R-loops are three-stranded nucleic acid structures that are abundant and widespread across
the genome and that have important physiological roles in many nuclear processes. Their …

[HTML][HTML] G-quadruplex resolution: From molecular mechanisms to physiological relevance

K Sato, P Knipscheer - DNA repair, 2023 - Elsevier
Guanine-rich DNA sequences can fold into stable four-stranded structures called G-
quadruplexes or G4s. Research in the past decade demonstrated that G4 structures are …

53BP1 deficiency leads to hyperrecombination using break-induced replication (BIR)

SB Shah, Y Li, S Li, Q Hu, T Wu, Y Shi… - Nature …, 2024 - nature.com
Break-induced replication (BIR) is mutagenic, and thus its use requires tight regulation, yet
the underlying mechanisms remain elusive. Here we uncover an important role of 53BP1 in …

MutSβ protects common fragile sites by facilitating homology-directed repair at DNA double-strand breaks with secondary structures

Y Li, Y Zhang, SB Shah, CY Chang… - Nucleic Acids …, 2024 - academic.oup.com
Common fragile sites (CFSs) are regions prone to chromosomal rearrangements, thereby
contributing to tumorigenesis. Under replication stress (RS), CFSs often harbor under …

Phosphorylation-dependent WRN-RPA interaction promotes recovery of stalled forks at secondary DNA structure

A Noto, P Valenzisi, F Di Feo, F Fratini… - Nature …, 2025 - nature.com
The WRN protein is vital for managing perturbed replication forks. Replication Protein A
strongly enhances WRN helicase activity in specific in vitro assays. However, the in vivo …

G4-Attention: Deep Learning Model with Attention for predicting DNA G-Quadruplexes

S Mukherjee, P Pramanik, P Basuchowdhuri… - arXiv preprint arXiv …, 2024 - arxiv.org
G-Quadruplexes are the four-stranded non-canonical nucleic acid secondary structures,
formed by the stacking arrangement of the guanine tetramers. They are involved in a wide …

Break-induced replication is activated to repair R-loop-associated double-strand breaks in SETX-deficient cells

T Wu, Y Li, LZ Shi, X Wu - bioRxiv, 2024 - biorxiv.org
The primary role of break-induced replication (BIR) is to repair single-ended double strand
breaks (seDSBs) generated at broken replication forks and eroding telomeres. In this study …

The human RAD52 complex undergoes phase separation and facilitates bundling and end-to-end tethering of RAD51 presynaptic filaments

I Alshareedah, S Pangeni, PA Dewan, M Honda… - bioRxiv, 2024 - biorxiv.org
Human RAD52 is a prime target for synthetical lethality approaches to treat cancers with
deficiency in homologous recombination. Among multiple cellular roles of RAD52, its …

Short oligomers rather than rings of human RAD52 promote single-strand annealing

MA Kharlamova, MS Kushwah, TJ Jachowski… - bioRxiv, 2023 - biorxiv.org
Genome maintenance and stability rely on the repair of DNA double-strand breaks. The
break repair can be mediated by the single-strand annealing protein RAD52. RAD52 forms …

Análise biofísica da interação entre Grb2 e DNA G-quadruplex e seu domínio SH2 com as moléculas cumarina e morina

LFB Oliveira - 2023 - repositorio.unesp.br
RESUMO O câncer é uma das principais causas de mortalidade global, representando um
desafio significativo para a saúde pública e a expectativa de vida. As células cancerígenas …