DNA double-strand break repair-pathway choice in somatic mammalian cells

R Scully, A Panday, R Elango, NA Willis - Nature reviews Molecular cell …, 2019 - nature.com
The major pathways of DNA double-strand break (DSB) repair are crucial for maintaining
genomic stability. However, if deployed in an inappropriate cellular context, these same …

Break-induced replication: the where, the why, and the how

J Kramara, B Osia, A Malkova - Trends in Genetics, 2018 - cell.com
Break-induced replication (BIR) is a pathway that repairs one-ended double-strand breaks
(DSBs). For decades, yeast model systems offered the only opportunities to study eukaryotic …

[HTML][HTML] Preserving replication fork integrity and competence via the homologous recombination pathway

AA Saada, SAE Lambert, AM Carr - DNA repair, 2018 - Elsevier
Flaws in the DNA replication process have emerged as a leading driver of genome
instability in human diseases. Alteration to replication fork progression is a defining feature …

Repair of replication-dependent double-strand breaks differs between the leading and lagging strands

MT Kimble, A Sane, RJD Reid, MJ Johnson… - Molecular Cell, 2025 - cell.com
Single-strand breaks (SSBs) are one of the most commonly occurring endogenous lesions
with the potential to give rise to cytotoxic double-strand breaks (DSBs) during DNA …

Enhancing secondary metabolites and alleviating environmental stress in crops with mycogenic nanoparticles: a comprehensive review

DB Shelke, NF Islam, MR Chambhare… - Biocatalysis and …, 2023 - Elsevier
Nanomaterials have emerged as a promising strategy for enhancing secondary metabolites
and improving plants to tolerate abiotic stress. Environmental stressors like extreme …

Break-induced replication: unraveling each step

L Liu, A Malkova - Trends in Genetics, 2022 - cell.com
Break-induced replication (BIR) repairs one-ended double-strand DNA breaks through
invasion into a homologous template followed by DNA synthesis. Different from S-phase …

Homologous recombination and the formation of complex genomic rearrangements

A Piazza, WD Heyer - Trends in cell biology, 2019 - cell.com
The maintenance of genome integrity involves multiple independent DNA damage
avoidance and repair mechanisms. However, the origin and pathways of the focal …

Dynamic processing of displacement loops during recombinational DNA repair

A Piazza, SS Shah, WD Wright, SK Gore, R Koszul… - Molecular cell, 2019 - cell.com
Displacement loops (D-loops) are pivotal intermediates of homologous recombination (HR),
a universal DNA double strand break (DSB) repair pathway. We developed a versatile assay …

Mechanisms restraining break‐induced replication at two‐ended DNA double‐strand breaks

N Pham, Z Yan, Y Yu, M Faria Afreen, A Malkova… - The EMBO …, 2021 - embopress.org
DNA synthesis during homologous recombination is highly mutagenic and prone to template
switches. Two‐ended DNA double‐strand breaks (DSBs) are usually repaired by gene …

A unified alternative telomere-lengthening pathway in yeast survivor cells

ZW Kockler, JM Comeron, A Malkova - Molecular cell, 2021 - cell.com
Alternative lengthening of telomeres (ALT) is a recombination process that maintains
telomeres in the absence of telomerase and helps cancer cells to survive. Yeast has been …